Click here to switch to the map view.

The map label for this gene is tse [H]

Identifier: 92112311

GI number: 92112311

Start: 199527

End: 200810

Strand: Direct

Name: tse [H]

Synonym: Csal_0176

Alternate gene names: 92112311

Gene position: 199527-200810 (Clockwise)

Preceding gene: 92112310

Following gene: 92112313

Centisome position: 5.4

GC content: 68.3

Gene sequence:

>1284_bases
ATGTCGCTCATGCGCCGTTTCTCGGTGCGCGTTCGCATGGTGGGGGCGATCGTCGTCGTTCTGGCGTTGCTGGGCGTGCT
GGGCGGTACCGGGGTGTGGGGCATATACCGCCTGTACGACGCCAGCCTGGGGCTGTTGGATCAGGGGCTCGTGCAGGAGA
CCCAGGCCGGTGTCATGGCCGCGCGGCTGGTCGAGGTGGCGCAGGGCTCGCTGTTGTTGTTCGTGGTCGCCGGATTGGTG
ACGGTTCTGGTCGTGGCGCCGCTGACCTGGCTCAACATGCGGGCGATCTGTGCGCCGGTGCGCGAGGCCAAGGACTATGC
GACCGCCATCGCCGGGGGAGATCTCACTCAGCCGATCGCCTGCCAGGGGCGTGATGAAATCAGCGAGCTGCAGGAGGCTC
TGGGCACCATGCAGACGGGCCTCGGCGGCATGGTCGCCCAGGTGCGCGACGCCAGCGATAGCGTCGCCATCGCCAGCGAG
GAAATCGCCCTGGGCAATCAGGACCTCGCCACGCGCACCGAACAATCGGTGGGCAACCTGCAGCAGAGCGTCGCCTCCAT
CGCCCAGTTGACCGAGAGCATCCAGCAGACCGCACAGGCCGCGCAGCGAGCCGACGAGCTGGCCACGCATACCGCCGAGG
CGGCCGTGCGCGGTGGCGAAGCGGTGAAGGATGTGGTCACGCGCATGCATGCCATCGCCGAGGCGGAGCGGCGTATCGGC
GACATCGTCGGGCTGATCGACGACATCGCCTTCCAGACCAATCTGCTGGCCCTGAACGCCTCGGTCGAGGCCGCCCGCGC
GGGAGGCCAGGGCCGAGGTTTCGCCGTGGTCGCCAGTGAGGTACGCAATCTCGCGGGACGTTCCGCCACGGCGGCCAACG
AGATCAAGACGCTGATTCGCGACAGCGGCGAAACGGTTGCCGCCGGCGTGAGCCAGGCTGAGGCCACAAGGACGACCATC
GAGGAGATCGTCGCCGGGGTGCAGCGGGTCAGTGGCGCGATCAGCGAGATCAGCAGTGCCGCCGGCGAGCAGTCCAGCGG
TATCGAGCAGGTCAACCATGCGGTGGAGCGCATTGATCGCATGATTCAGCAGAACGCGGCCCTGGTCGAGCAGTCTGCGG
CCGCGGCGGCCTCGCTGCGCGATCAGTCGTCCCGGCTGGCCAGCGTGGTACACCGGTTCCGCCTCATGGAAGCGTCGCAG
GAGGCACCCGTGTCGCGTGACGCAGCGCCACGCTGGGCTTTGCCAGCGCACCACCAGGTCGAGTCGCACGCCGCCTGGGC
ATGA

Upstream 100 bases:

>100_bases
GAATCCTCGCGTAGTTGACGTACATCAAGGTTCGCGATGCGTGCTCTGTCACAGTGGTGGAATGACTTTCGACCATTCAA
GGGGCAGGGAACTCATGTTG

Downstream 100 bases:

>100_bases
AGCCTGGCCGCGTCGGTACCTGCGGCAAGGACCTGCATCAGAAATTTTTTCATTAAAACTTGCCGGCTGTACTCAAGTCC
GCCCCCGGGAGGTCGATATT

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MSLMRRFSVRVRMVGAIVVVLALLGVLGGTGVWGIYRLYDASLGLLDQGLVQETQAGVMAARLVEVAQGSLLLFVVAGLV
TVLVVAPLTWLNMRAICAPVREAKDYATAIAGGDLTQPIACQGRDEISELQEALGTMQTGLGGMVAQVRDASDSVAIASE
EIALGNQDLATRTEQSVGNLQQSVASIAQLTESIQQTAQAAQRADELATHTAEAAVRGGEAVKDVVTRMHAIAEAERRIG
DIVGLIDDIAFQTNLLALNASVEAARAGGQGRGFAVVASEVRNLAGRSATAANEIKTLIRDSGETVAAGVSQAEATRTTI
EEIVAGVQRVSGAISEISSAAGEQSSGIEQVNHAVERIDRMIQQNAALVEQSAAAAASLRDQSSRLASVVHRFRLMEASQ
EAPVSRDAAPRWALPAHHQVESHAAWA

Sequences:

>Translated_427_residues
MSLMRRFSVRVRMVGAIVVVLALLGVLGGTGVWGIYRLYDASLGLLDQGLVQETQAGVMAARLVEVAQGSLLLFVVAGLV
TVLVVAPLTWLNMRAICAPVREAKDYATAIAGGDLTQPIACQGRDEISELQEALGTMQTGLGGMVAQVRDASDSVAIASE
EIALGNQDLATRTEQSVGNLQQSVASIAQLTESIQQTAQAAQRADELATHTAEAAVRGGEAVKDVVTRMHAIAEAERRIG
DIVGLIDDIAFQTNLLALNASVEAARAGGQGRGFAVVASEVRNLAGRSATAANEIKTLIRDSGETVAAGVSQAEATRTTI
EEIVAGVQRVSGAISEISSAAGEQSSGIEQVNHAVERIDRMIQQNAALVEQSAAAAASLRDQSSRLASVVHRFRLMEASQ
EAPVSRDAAPRWALPAHHQVESHAAWA
>Mature_426_residues
SLMRRFSVRVRMVGAIVVVLALLGVLGGTGVWGIYRLYDASLGLLDQGLVQETQAGVMAARLVEVAQGSLLLFVVAGLVT
VLVVAPLTWLNMRAICAPVREAKDYATAIAGGDLTQPIACQGRDEISELQEALGTMQTGLGGMVAQVRDASDSVAIASEE
IALGNQDLATRTEQSVGNLQQSVASIAQLTESIQQTAQAAQRADELATHTAEAAVRGGEAVKDVVTRMHAIAEAERRIGD
IVGLIDDIAFQTNLLALNASVEAARAGGQGRGFAVVASEVRNLAGRSATAANEIKTLIRDSGETVAAGVSQAEATRTTIE
EIVAGVQRVSGAISEISSAAGEQSSGIEQVNHAVERIDRMIQQNAALVEQSAAAAASLRDQSSRLASVVHRFRLMEASQE
APVSRDAAPRWALPAHHQVESHAAWA

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788194, Length=330, Percent_Identity=45.7575757575758, Blast_Score=249, Evalue=2e-67,
Organism=Escherichia coli, GI2367378, Length=345, Percent_Identity=47.2463768115942, Blast_Score=247, Evalue=9e-67,
Organism=Escherichia coli, GI1788195, Length=307, Percent_Identity=48.2084690553746, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1787690, Length=328, Percent_Identity=43.2926829268293, Blast_Score=237, Evalue=1e-63,
Organism=Escherichia coli, GI1789453, Length=333, Percent_Identity=39.9399399399399, Blast_Score=213, Evalue=3e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 44705; Mature: 44574

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLMRRFSVRVRMVGAIVVVLALLGVLGGTGVWGIYRLYDASLGLLDQGLVQETQAGVMA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLVEVAQGSLLLFVVAGLVTVLVVAPLTWLNMRAICAPVREAKDYATAIAGGDLTQPIA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
CQGRDEISELQEALGTMQTGLGGMVAQVRDASDSVAIASEEIALGNQDLATRTEQSVGNL
CCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCEECHHHHHCCCCHHHHHHHHHHHHH
QQSVASIAQLTESIQQTAQAAQRADELATHTAEAAVRGGEAVKDVVTRMHAIAEAERRIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DIVGLIDDIAFQTNLLALNASVEAARAGGQGRGFAVVASEVRNLAGRSATAANEIKTLIR
HHHHHHHHHHHHHHHEEECCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
DSGETVAAGVSQAEATRTTIEEIVAGVQRVSGAISEISSAAGEQSSGIEQVNHAVERIDR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
MIQQNAALVEQSAAAAASLRDQSSRLASVVHRFRLMEASQEAPVSRDAAPRWALPAHHQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
ESHAAWA
HHHCCCC
>Mature Secondary Structure 
SLMRRFSVRVRMVGAIVVVLALLGVLGGTGVWGIYRLYDASLGLLDQGLVQETQAGVMA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLVEVAQGSLLLFVVAGLVTVLVVAPLTWLNMRAICAPVREAKDYATAIAGGDLTQPIA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
CQGRDEISELQEALGTMQTGLGGMVAQVRDASDSVAIASEEIALGNQDLATRTEQSVGNL
CCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCEECHHHHHCCCCHHHHHHHHHHHHH
QQSVASIAQLTESIQQTAQAAQRADELATHTAEAAVRGGEAVKDVVTRMHAIAEAERRIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DIVGLIDDIAFQTNLLALNASVEAARAGGQGRGFAVVASEVRNLAGRSATAANEIKTLIR
HHHHHHHHHHHHHHHEEECCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
DSGETVAAGVSQAEATRTTIEEIVAGVQRVSGAISEISSAAGEQSSGIEQVNHAVERIDR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
MIQQNAALVEQSAAAAASLRDQSSRLASVVHRFRLMEASQEAPVSRDAAPRWALPAHHQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
ESHAAWA
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2496104 [H]