Click here to switch to the map view.

The map label for this gene is yagI [H]

Identifier: 92112269

GI number: 92112269

Start: 155311

End: 156117

Strand: Direct

Name: yagI [H]

Synonym: Csal_0134

Alternate gene names: 92112269

Gene position: 155311-156117 (Clockwise)

Preceding gene: 92112268

Following gene: 92112270

Centisome position: 4.2

GC content: 64.44

Gene sequence:

>807_bases
ATGGCCGACGACGAGACGCGCAAGTACGTGATTCCCGGGCTGGAGCGTGGCCTGACGATTCTCATGGCCTTGAGCCGCAG
CCATCGCGAGATGAGTCTGGCCGAGATCGTCAAATGCGTGGAGTGGCCCAAGGCTTCCGTGTATCGAGCCGTGCAGACGC
TGGAGTACATGGGCTTCGTGCGCCGTCATCCGTCCAGCGGCCTGTATTCCCTCGGCGTCAGTGTCCTGCGGCTCGGCTTC
GAGTACGTCTCGTCCCTCGATCTGGTGCAGGTGGGCCAGCCGGTCATCGAATCGCTGCGCGACCGTAGCGGCTGTTCCAG
TCATATCGTGATTCGCGACGGTCGCGATGTGATCTACGTGGCCCGTGTCAGTGCGGCCGGTACCACGACCCATCGTGTCA
GTGTCGGGACGCGTCTGCCGGTGCATCGCACGTCCCTGGGCCGGGTCCTGTTGACCGGCATGTCCCGCGAGGCCTTCGAG
CGGCTCTATCCCGACCCGGAACTGCCGGATACCCGACCGGGAGCCCCGGCCGATCGCGAAGCGCTATGGCAACTGGTGCA
GGACGACCGGGCGCGGGGCTATGTGGTCGGCGAGTCGTTCTTCCAGTTGGGGATTTCCTCGATCGTCTACCCGCTCTTTA
CGCAAGAGGGCGACGTCGCCGGCGCCATCAGCATCATGGTGCCCGTCCACGAGATTCCCGCCGAGGACCGTGAGCGCCTG
CGCGGCTATGTCGAAGATGCCGCCATGACCATTTCCGAGATGCTGGGATATCACGACCCGCGAGCGAGGCGATCGGATAT
GCCATGA

Upstream 100 bases:

>100_bases
ATCTATTGTCCGAGTGGTCCGACTTCGTGACGGGCCAGCTGATTCCCGTCAATGGCGGATTCGTGTGTCGCTGAAACAAG
CGCGAACGCAGGAGAGAGAG

Downstream 100 bases:

>100_bases
CCAACCGTATCGAGTAGCGGGGCCTGACGCGCCAAGCCGCGTGTGATGCGCCCTATCCCATAGCAACGACCATGTTTGCC
GTCCTGCGGGACGGCAAAGC

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MADDETRKYVIPGLERGLTILMALSRSHREMSLAEIVKCVEWPKASVYRAVQTLEYMGFVRRHPSSGLYSLGVSVLRLGF
EYVSSLDLVQVGQPVIESLRDRSGCSSHIVIRDGRDVIYVARVSAAGTTTHRVSVGTRLPVHRTSLGRVLLTGMSREAFE
RLYPDPELPDTRPGAPADREALWQLVQDDRARGYVVGESFFQLGISSIVYPLFTQEGDVAGAISIMVPVHEIPAEDRERL
RGYVEDAAMTISEMLGYHDPRARRSDMP

Sequences:

>Translated_268_residues
MADDETRKYVIPGLERGLTILMALSRSHREMSLAEIVKCVEWPKASVYRAVQTLEYMGFVRRHPSSGLYSLGVSVLRLGF
EYVSSLDLVQVGQPVIESLRDRSGCSSHIVIRDGRDVIYVARVSAAGTTTHRVSVGTRLPVHRTSLGRVLLTGMSREAFE
RLYPDPELPDTRPGAPADREALWQLVQDDRARGYVVGESFFQLGISSIVYPLFTQEGDVAGAISIMVPVHEIPAEDRERL
RGYVEDAAMTISEMLGYHDPRARRSDMP
>Mature_267_residues
ADDETRKYVIPGLERGLTILMALSRSHREMSLAEIVKCVEWPKASVYRAVQTLEYMGFVRRHPSSGLYSLGVSVLRLGFE
YVSSLDLVQVGQPVIESLRDRSGCSSHIVIRDGRDVIYVARVSAAGTTTHRVSVGTRLPVHRTSLGRVLLTGMSREAFER
LYPDPELPDTRPGAPADREALWQLVQDDRARGYVVGESFFQLGISSIVYPLFTQEGDVAGAISIMVPVHEIPAEDRERLR
GYVEDAAMTISEMLGYHDPRARRSDMP

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=248, Percent_Identity=25.8064516129032, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1786715, Length=244, Percent_Identity=27.0491803278689, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1788131, Length=240, Percent_Identity=25.8333333333333, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI87082359, Length=229, Percent_Identity=23.5807860262009, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789999, Length=261, Percent_Identity=22.6053639846743, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790752, Length=196, Percent_Identity=24.4897959183673, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788581, Length=254, Percent_Identity=24.0157480314961, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29906; Mature: 29774

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADDETRKYVIPGLERGLTILMALSRSHREMSLAEIVKCVEWPKASVYRAVQTLEYMGFV
CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RRHPSSGLYSLGVSVLRLGFEYVSSLDLVQVGQPVIESLRDRSGCSSHIVIRDGRDVIYV
HHCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHCCCCCCEEEEECCCCEEEE
ARVSAAGTTTHRVSVGTRLPVHRTSLGRVLLTGMSREAFERLYPDPELPDTRPGAPADRE
EEECCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHH
ALWQLVQDDRARGYVVGESFFQLGISSIVYPLFTQEGDVAGAISIMVPVHEIPAEDRERL
HHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHCCCHHHHHH
RGYVEDAAMTISEMLGYHDPRARRSDMP
HHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ADDETRKYVIPGLERGLTILMALSRSHREMSLAEIVKCVEWPKASVYRAVQTLEYMGFV
CCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RRHPSSGLYSLGVSVLRLGFEYVSSLDLVQVGQPVIESLRDRSGCSSHIVIRDGRDVIYV
HHCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHCCCCCCEEEEECCCCEEEE
ARVSAAGTTTHRVSVGTRLPVHRTSLGRVLLTGMSREAFERLYPDPELPDTRPGAPADRE
EEECCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHH
ALWQLVQDDRARGYVVGESFFQLGISSIVYPLFTQEGDVAGAISIMVPVHEIPAEDRERL
HHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHCCCHHHHHH
RGYVEDAAMTISEMLGYHDPRARRSDMP
HHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]