Definition Nitrobacter hamburgensis X14 plasmid 3, complete sequence.
Accession NC_007961
Length 121,408

Click here to switch to the map view.

The map label for this gene is 92109718

Identifier: 92109718

GI number: 92109718

Start: 61332

End: 61805

Strand: Reverse

Name: 92109718

Synonym: Nham_4606

Alternate gene names: NA

Gene position: 61805-61332 (Counterclockwise)

Preceding gene: 92109720

Following gene: 92109717

Centisome position: 50.91

GC content: 54.22

Gene sequence:

>474_bases
GTGCGCCTCCATCGGCCGGCTCGCAGCTCGACCGTCGATGGCGCATTAAATCCTGTGGTGACTCTGATTCGGCCGCGACA
AATCGACTCGCATCCCGACCACGGCGCACCTCAACAAGCGATCGCCTACGGCGTGGACGCTCGATGCACACCGACCATTC
GAAACCAAACTTGGCAATATTGTACGGCGGACTACGATCCATCGCTTCGGCAACACGACGAACTTCTTCGCTGTATCGGA
GCGCTTGACGACCTCAACTTTCTGCATAGTTTCCTCCATAAGACGTCGGAAGGGCTTGCTCCGGCTTGGCGTCATCAACA
TCTCGCGCCTGCCGCTGGTATCTGGAGTTTGTTGATCGACCAAAGCAATAAGGATTCTCACTGTGTTCCGATCAAGATTG
TCGCGTTACAAAATCCCCCAATTCTCAATGGTGCTGACGGGGAACACAACCTGATATCGACACTTATTGTGTGA

Upstream 100 bases:

>100_bases
CAAGATGGGCGTAGGCCTCGATCAGAAGTTGGGGGCCGGTTCTTGTCGCTTCGAACGACACGTGCATGCGCAGCACAGGG
CTATCCATGCGCCGGACCAT

Downstream 100 bases:

>100_bases
GTGTTGTGTGAGCCGCGCAGGCGGAGGTACAGGGTCGGAAGAAAAATCCGTCCTGCACACCGGGAGTAAGCTATTGCTGC
CTCAAGAACTGCACGGAGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MRLHRPARSSTVDGALNPVVTLIRPRQIDSHPDHGAPQQAIAYGVDARCTPTIRNQTWQYCTADYDPSLRQHDELLRCIG
ALDDLNFLHSFLHKTSEGLAPAWRHQHLAPAAGIWSLLIDQSNKDSHCVPIKIVALQNPPILNGADGEHNLISTLIV

Sequences:

>Translated_157_residues
MRLHRPARSSTVDGALNPVVTLIRPRQIDSHPDHGAPQQAIAYGVDARCTPTIRNQTWQYCTADYDPSLRQHDELLRCIG
ALDDLNFLHSFLHKTSEGLAPAWRHQHLAPAAGIWSLLIDQSNKDSHCVPIKIVALQNPPILNGADGEHNLISTLIV
>Mature_157_residues
MRLHRPARSSTVDGALNPVVTLIRPRQIDSHPDHGAPQQAIAYGVDARCTPTIRNQTWQYCTADYDPSLRQHDELLRCIG
ALDDLNFLHSFLHKTSEGLAPAWRHQHLAPAAGIWSLLIDQSNKDSHCVPIKIVALQNPPILNGADGEHNLISTLIV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17399; Mature: 17399

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLHRPARSSTVDGALNPVVTLIRPRQIDSHPDHGAPQQAIAYGVDARCTPTIRNQTWQY
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCCCE
CTADYDPSLRQHDELLRCIGALDDLNFLHSFLHKTSEGLAPAWRHQHLAPAAGIWSLLID
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHC
QSNKDSHCVPIKIVALQNPPILNGADGEHNLISTLIV
CCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MRLHRPARSSTVDGALNPVVTLIRPRQIDSHPDHGAPQQAIAYGVDARCTPTIRNQTWQY
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCCCE
CTADYDPSLRQHDELLRCIGALDDLNFLHSFLHKTSEGLAPAWRHQHLAPAAGIWSLLID
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHC
QSNKDSHCVPIKIVALQNPPILNGADGEHNLISTLIV
CCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA