Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is mdtP [H]
Identifier: 91789096
GI number: 91789096
Start: 3424927
End: 3426369
Strand: Reverse
Name: mdtP [H]
Synonym: Bpro_3236
Alternate gene names: 91789096
Gene position: 3426369-3424927 (Counterclockwise)
Preceding gene: 91789097
Following gene: 91789095
Centisome position: 65.89
GC content: 67.64
Gene sequence:
>1443_bases ATGGCCCTGGTAACGGCGGCCGGCCTGGTGGCTGCAAGCCTGATGGCCACGGGCCTCACCGGCTGCGCCGACATGTCCGG CATCGCGCCGCAGTCCAGCCTGCGCGATGCGCCTTCGCTGGGCCTGAACGCCGATGCGGCAGCAGGGCAGGCAGGCGTTG CCGCCGAGTGGTGGCGCGACTTTGGCGACGAGCAGCTCAATGGCCTGATTGCCCAGGCGCTGCAAAGCAGCCCCAGCCTG AAGCTTGCACAGGCCCGCCTGGCACGGGCCCGGGCCGTGATGGAAGTGGCGGATGCCGCCACTTTGCCGCAGCTCAATGG CCAGATCGACCTGACACGGCAGCGCTACACCGCTAACGGCGCGGTGCCCCCACCGCTGGCGGGCGCCATCCGCGACAGCG GCACGGTTCAGCTCAACGCCAGCTGGGAACTTGATTTCTTTGGAAAAAACCGAGCCGCACTGGATGCCGCCCTGGGCAGC GCCCATGCGGCCGAGGCCGACGCACAGGCCGCGCGCGTGCTGCTTGCCAGCAATGTAGCCCGCAGCTACTTTCAGCTGGC TCGCCTCCACGAGCAGGCCTTTGTTGCGCGCCGCACGCTGGCGCAGCGGGAAGAAACCCTCAAGCTGGTGCAGGACCGCG TGGCCGCCGGGCTCGACACCCGGCTCGAGTTGCGCCAGAGCGAGGGCGGCCTGCCGGAGGCGCGCCTGCAACTGGAGACG GTGCAGGAGCAGATCGCGCTGACGCGCAACGCACTGGCTGCCCTGGTTGGGCAAGCCGGCAGCAGCGCCCTGGCCCAGAA TCCACCCGCATTGGCAGCAATCAAAAACGTTGCGTTAACGTCCAGCATTCCGGCCGACCTGCTGGGCCGCCGGGCCGACA TTGCCGCCGCGCGCTGGCGTGTCGAAGCTGCGTCCAAAGATGTGGTGAATGCGAAGACACAGTTCTATCCCAATATCAAC CTGGTTGCCTTCGCCGGTTTTTCCAGCATTGGCCTGGGCCGTCTGCTTGACGCCGGCAGCCAGCAGTGGGGCGTAGGCCC GGCGCTGCGCCTGCCGATTTTTGATGCGGGCCGGCTGCGCGCCAACCTGCGCGGCAAGACCGCCGACCTTGATGCCGCCG TCGAAAGCTACAACGCCGCCGTGATTGATGCGGTGCGTGACGTGGCCGACCAGGTAGCCTCATCGCAGGCCATTGGTCGT CAGCAGGCCGAGCAGCGGTCCGCGCAGGAGGCCGCAGAGGGCGCTTACGAGATTGCCGTGCAGCGTTACAGGGCTGGCCT GGGCAACTACCTCAATGTGCTGACGGCCGAAACCAGTGTGCTGACCCAGCGCCGCCTGGCGGTTGACCTGGCCGCCCGCG CGCTGGACACGCAGGTAGCGCTGATGCGCGCACTGGGTGGTGGTTACACGCCAACGTCGGCAACCGCTTCCCAAACGCTA TAA
Upstream 100 bases:
>100_bases GAGAAGTGAAACAAACGCCTCTTTACCTTCAATAACCGGCCCGGTGACTGCGCCCGCGGGCAGGTCGAAGCGTTTGCCGC TCTGGCATGCGTCCGTACGC
Downstream 100 bases:
>100_bases AAACCCGTAGCTTCTTTCGCCCGTGTTTGTTGGGCCAGAGGCCTGGTAGACCTAATTGACCTAATTGACTTAATTGATCA GGAACATCATGACAACTCCA
Product: RND efflux system outer membrane lipoprotein NodT
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 480; Mature: 479
Protein sequence:
>480_residues MALVTAAGLVAASLMATGLTGCADMSGIAPQSSLRDAPSLGLNADAAAGQAGVAAEWWRDFGDEQLNGLIAQALQSSPSL KLAQARLARARAVMEVADAATLPQLNGQIDLTRQRYTANGAVPPPLAGAIRDSGTVQLNASWELDFFGKNRAALDAALGS AHAAEADAQAARVLLASNVARSYFQLARLHEQAFVARRTLAQREETLKLVQDRVAAGLDTRLELRQSEGGLPEARLQLET VQEQIALTRNALAALVGQAGSSALAQNPPALAAIKNVALTSSIPADLLGRRADIAAARWRVEAASKDVVNAKTQFYPNIN LVAFAGFSSIGLGRLLDAGSQQWGVGPALRLPIFDAGRLRANLRGKTADLDAAVESYNAAVIDAVRDVADQVASSQAIGR QQAEQRSAQEAAEGAYEIAVQRYRAGLGNYLNVLTAETSVLTQRRLAVDLAARALDTQVALMRALGGGYTPTSATASQTL
Sequences:
>Translated_480_residues MALVTAAGLVAASLMATGLTGCADMSGIAPQSSLRDAPSLGLNADAAAGQAGVAAEWWRDFGDEQLNGLIAQALQSSPSL KLAQARLARARAVMEVADAATLPQLNGQIDLTRQRYTANGAVPPPLAGAIRDSGTVQLNASWELDFFGKNRAALDAALGS AHAAEADAQAARVLLASNVARSYFQLARLHEQAFVARRTLAQREETLKLVQDRVAAGLDTRLELRQSEGGLPEARLQLET VQEQIALTRNALAALVGQAGSSALAQNPPALAAIKNVALTSSIPADLLGRRADIAAARWRVEAASKDVVNAKTQFYPNIN LVAFAGFSSIGLGRLLDAGSQQWGVGPALRLPIFDAGRLRANLRGKTADLDAAVESYNAAVIDAVRDVADQVASSQAIGR QQAEQRSAQEAAEGAYEIAVQRYRAGLGNYLNVLTAETSVLTQRRLAVDLAARALDTQVALMRALGGGYTPTSATASQTL >Mature_479_residues ALVTAAGLVAASLMATGLTGCADMSGIAPQSSLRDAPSLGLNADAAAGQAGVAAEWWRDFGDEQLNGLIAQALQSSPSLK LAQARLARARAVMEVADAATLPQLNGQIDLTRQRYTANGAVPPPLAGAIRDSGTVQLNASWELDFFGKNRAALDAALGSA HAAEADAQAARVLLASNVARSYFQLARLHEQAFVARRTLAQREETLKLVQDRVAAGLDTRLELRQSEGGLPEARLQLETV QEQIALTRNALAALVGQAGSSALAQNPPALAAIKNVALTSSIPADLLGRRADIAAARWRVEAASKDVVNAKTQFYPNINL VAFAGFSSIGLGRLLDAGSQQWGVGPALRLPIFDAGRLRANLRGKTADLDAAVESYNAAVIDAVRDVADQVASSQAIGRQ QAEQRSAQEAAEGAYEIAVQRYRAGLGNYLNVLTAETSVLTQRRLAVDLAARALDTQVALMRALGGGYTPTSATASQTL
Specific function: Could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride [H]
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]
Homologues:
Organism=Escherichia coli, GI2367348, Length=466, Percent_Identity=32.4034334763949, Blast_Score=190, Evalue=2e-49, Organism=Escherichia coli, GI1786785, Length=467, Percent_Identity=31.0492505353319, Blast_Score=174, Evalue=1e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003423 - InterPro: IPR010131 [H]
Pfam domain/function: PF02321 OEP [H]
EC number: NA
Molecular weight: Translated: 50202; Mature: 50071
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALVTAAGLVAASLMATGLTGCADMSGIAPQSSLRDAPSLGLNADAAAGQAGVAAEWWRD CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHC FGDEQLNGLIAQALQSSPSLKLAQARLARARAVMEVADAATLPQLNGQIDLTRQRYTANG CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHEEECCC AVPPPLAGAIRDSGTVQLNASWELDFFGKNRAALDAALGSAHAAEADAQAARVLLASNVA CCCCCCHHHHCCCCEEEEECEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH RSYFQLARLHEQAFVARRTLAQREETLKLVQDRVAAGLDTRLELRQSEGGLPEARLQLET HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHH VQEQIALTRNALAALVGQAGSSALAQNPPALAAIKNVALTSSIPADLLGRRADIAAARWR HHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHH VEAASKDVVNAKTQFYPNINLVAFAGFSSIGLGRLLDAGSQQWGVGPALRLPIFDAGRLR HHHHCCHHHCCHHHCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHH ANLRGKTADLDAAVESYNAAVIDAVRDVADQVASSQAIGRQQAEQRSAQEAAEGAYEIAV HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRYRAGLGNYLNVLTAETSVLTQRRLAVDLAARALDTQVALMRALGGGYTPTSATASQTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure ALVTAAGLVAASLMATGLTGCADMSGIAPQSSLRDAPSLGLNADAAAGQAGVAAEWWRD CCHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHC FGDEQLNGLIAQALQSSPSLKLAQARLARARAVMEVADAATLPQLNGQIDLTRQRYTANG CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHEEECCC AVPPPLAGAIRDSGTVQLNASWELDFFGKNRAALDAALGSAHAAEADAQAARVLLASNVA CCCCCCHHHHCCCCEEEEECEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH RSYFQLARLHEQAFVARRTLAQREETLKLVQDRVAAGLDTRLELRQSEGGLPEARLQLET HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHH VQEQIALTRNALAALVGQAGSSALAQNPPALAAIKNVALTSSIPADLLGRRADIAAARWR HHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHH VEAASKDVVNAKTQFYPNINLVAFAGFSSIGLGRLLDAGSQQWGVGPALRLPIFDAGRLR HHHHCCHHHCCHHHCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHH ANLRGKTADLDAAVESYNAAVIDAVRDVADQVASSQAIGRQQAEQRSAQEAAEGAYEIAV HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRYRAGLGNYLNVLTAETSVLTQRRLAVDLAARALDTQVALMRALGGGYTPTSATASQTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]