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The map label for this gene is xerD [H]

Identifier: 91789051

GI number: 91789051

Start: 3374097

End: 3374999

Strand: Reverse

Name: xerD [H]

Synonym: Bpro_3191

Alternate gene names: 91789051

Gene position: 3374999-3374097 (Counterclockwise)

Preceding gene: 91789052

Following gene: 91789048

Centisome position: 64.9

GC content: 63.34

Gene sequence:

>903_bases
ATGCAATCACAGAGCCAGTCCAGCATTGATGGGTTTATCGACGCCTTGTGGCTGGAAGACGGCTTGTCGAAAAATACCCT
GGCGGCCTACCGGCGCGACCTGTCGCTGTTCGCGGCCTGGCTGGCTGCTCCCGCGCAACAGGGCCGCCGGCTCGACGATA
CGGTTGAGACGGACCTGAACCGTTACTTTTCCACCAGGCATGCCACCACCAAGGCCACCTCGGCCAACCGGCGCCTGACG
GTGTTCAAGCGCTACTTTCGCTGGGCGCTGCGTGAGCGACTGATCACGGTGGATCCGACGCTGAAACTGCAATCCGCCAA
ACAGGCCTTGCGGGTGCCCAAGGTGATGAGCGAAGCCCAGGTGGAGGCCCTGCTGGCCGCGCCCAGTGAAAGCACGCCGC
TTGGGCAGCGTGACCGGGCCATGCTGGAGCTGATGTACGCCAGCGGACTGCGCGTCAGCGAACTGGTCGGGCTCAAGACC
TTTCACGTGGGCCTGAATGAAGGCGTGCTGCGCGTCATGGGCAAGGGCAGCAAGGAGCGGTTGGTACCCTTCGGGCAGGT
GGCGCGCGAATGGGTTGTGCTGTACCTGGCCGAGGCACGGCCGGCCATTCTGGGCGGCCAGCAGACCGATGACCTGTTTG
TCACCAACCGTGGCAGCGGCATGAGCCGGGTGATGTTCTGGATGTTGGTCAAGAAGTACGCGCAGCTGGCGGGCATCCAT
TCGCCCTTGTCACCGCACACCTTGCGCCACGCGTTTGCCACGCATTTGCTGAATCATGGGGCTGACCTGAGGGCCGTGCA
GATGCTGCTGGGCCACGCCGATATTTCCACCACCACGATTTATACCCATGTGGCCCGGGAACGCCTGAAGGCGCTGCATG
CGCAGCATCATCCACGGGGCTGA

Upstream 100 bases:

>100_bases
TGCCCGTGCCGCATGATCGGATCGCCGACGCCGCCGGAATTGTCACGGCAAGCCGCCTCCGGGTGGCTTTTTCTGGTTTT
CTTTTTGTTATCGTCGGAGC

Downstream 100 bases:

>100_bases
AGCAAGGTGAACGGCGGGCAGGGGATCAGCGGTACGTCAGCGGTACATGTAGTCGCGGCTGAAGGGGTAGACCGACTGGG
CACCCTTGACCCCCGCTTCA

Product: tyrosine recombinase XerD subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MQSQSQSSIDGFIDALWLEDGLSKNTLAAYRRDLSLFAAWLAAPAQQGRRLDDTVETDLNRYFSTRHATTKATSANRRLT
VFKRYFRWALRERLITVDPTLKLQSAKQALRVPKVMSEAQVEALLAAPSESTPLGQRDRAMLELMYASGLRVSELVGLKT
FHVGLNEGVLRVMGKGSKERLVPFGQVAREWVVLYLAEARPAILGGQQTDDLFVTNRGSGMSRVMFWMLVKKYAQLAGIH
SPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKALHAQHHPRG

Sequences:

>Translated_300_residues
MQSQSQSSIDGFIDALWLEDGLSKNTLAAYRRDLSLFAAWLAAPAQQGRRLDDTVETDLNRYFSTRHATTKATSANRRLT
VFKRYFRWALRERLITVDPTLKLQSAKQALRVPKVMSEAQVEALLAAPSESTPLGQRDRAMLELMYASGLRVSELVGLKT
FHVGLNEGVLRVMGKGSKERLVPFGQVAREWVVLYLAEARPAILGGQQTDDLFVTNRGSGMSRVMFWMLVKKYAQLAGIH
SPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKALHAQHHPRG
>Mature_300_residues
MQSQSQSSIDGFIDALWLEDGLSKNTLAAYRRDLSLFAAWLAAPAQQGRRLDDTVETDLNRYFSTRHATTKATSANRRLT
VFKRYFRWALRERLITVDPTLKLQSAKQALRVPKVMSEAQVEALLAAPSESTPLGQRDRAMLELMYASGLRVSELVGLKT
FHVGLNEGVLRVMGKGSKERLVPFGQVAREWVVLYLAEARPAILGGQQTDDLFVTNRGSGMSRVMFWMLVKKYAQLAGIH
SPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKALHAQHHPRG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=299, Percent_Identity=54.180602006689, Blast_Score=300, Evalue=1e-82,
Organism=Escherichia coli, GI1790244, Length=296, Percent_Identity=34.7972972972973, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1790768, Length=170, Percent_Identity=32.3529411764706, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33576; Mature: 33576

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSQSQSSIDGFIDALWLEDGLSKNTLAAYRRDLSLFAAWLAAPAQQGRRLDDTVETDLN
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RYFSTRHATTKATSANRRLTVFKRYFRWALRERLITVDPTLKLQSAKQALRVPKVMSEAQ
HHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHH
VEALLAAPSESTPLGQRDRAMLELMYASGLRVSELVGLKTFHVGLNEGVLRVMGKGSKER
HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHEECCCCHHHHHHHCCCCHHH
LVPFGQVAREWVVLYLAEARPAILGGQQTDDLFVTNRGSGMSRVMFWMLVKKYAQLAGIH
CCCHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
SPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKALHAQHHPRG
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQSQSQSSIDGFIDALWLEDGLSKNTLAAYRRDLSLFAAWLAAPAQQGRRLDDTVETDLN
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RYFSTRHATTKATSANRRLTVFKRYFRWALRERLITVDPTLKLQSAKQALRVPKVMSEAQ
HHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHH
VEALLAAPSESTPLGQRDRAMLELMYASGLRVSELVGLKTFHVGLNEGVLRVMGKGSKER
HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHEECCCCHHHHHHHCCCCHHH
LVPFGQVAREWVVLYLAEARPAILGGQQTDDLFVTNRGSGMSRVMFWMLVKKYAQLAGIH
CCCHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
SPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKALHAQHHPRG
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]