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The map label for this gene is ycfD [H]

Identifier: 91789035

GI number: 91789035

Start: 3359867

End: 3361093

Strand: Reverse

Name: ycfD [H]

Synonym: Bpro_3175

Alternate gene names: 91789035

Gene position: 3361093-3359867 (Counterclockwise)

Preceding gene: 91789037

Following gene: 91789034

Centisome position: 64.63

GC content: 62.51

Gene sequence:

>1227_bases
ATGGATGTAAATCACGCTCTAGACCTTCTTGCCGGCTTGAGCCCGGCCCGATTCATGCGCCAGTACTGGCAAAAAAAGCC
GCTTCTTGTGCGTCAGGCCATTCCCGGATTTCAGCCTTTGCTCAATCGCACAGACCTGTTCAGGCTGGCTGGGCAGGAGC
ATGTCGAGTCCCGTCTGATTGCCCGTCAGGCCCAGGGCTGGCGCATGCGGCAGGGGCCGTTTGCCAGGCGAAGCCTGCCG
CCATTGAGCCGGGATGCATGGACGCTTCTGGTGCAGGGGGTGGATCTGCACGATGCGCGCGCGCATGCGCTGTTGCAAAA
GTTTCGTTTTGTGCCGGATGCGCGGCTGGATGACCTGATGATCTCGTTTGCAACGCCGGGCGGCGGCGTGGGGCCGCACT
TTGACAGTTACGACGTGTTTTTGCTCCAGGCCAGCGGGCGCCGGCGATGGAAAATTGGACAGCAAAAAGATCTGACCTTG
CAGCAAGGGGTGCCGTTGAAAATACTGCAGAACTTCGAACCTGACGAGGAGTTTGTCCTTGAGGCGGGCGACATGCTTTA
CCTGCCGCCGCGCTATGCACATGATGGCATTGCCGAGGCTGTGGCGGGGAAGGTTGGCGAGGCCGCCGACTGCATGACCT
ATTCCATTGGTTTTCGGGCACCAGGGCGCAGCGAACTGGCGGCAGAACTGCTGCACCGCCTGGCCGAGTTCAGCGAAGAT
GAGCCGGAATCGTCCTCCGGCGAGGGGCGTCGGCGTGCCAGTCCTTCGCCGAAAATTTATCGCGACCCGCGCCAGGCGGC
TACGGCGACGCCTGCGGCGCTGCCTGAGGGGCTTGCAAGGTTCGCCGGGCAAGCCGTTCTTGAGGCGCTCAAGGATCCGC
TCGCACTGGCCTGCGCATTGGGGGAATACATGACCGAACCCAAGCCTTCCGTCTGGTTTGAGGCTCCCCTGCAGGACTGG
GTGCCGGACGCCGTCAAGGCGGGCAAAGCCTCCATTTACCTTGATGCGCGCAGCCGGATGATGTATGACAGCGACCATGT
ATTTATCAATGGTGAAAGCTACCGTGCCAAAGGTACAGATGCCGCCCTCATGCGCCGGCTGGCCGACCAGCGCGGTCTCT
CGGCCGGTGACTTGCGCAGGGCCAGCACGGCTGCTCTTGCGTTGCTGGCGGACTGGCATGAGGCCGGCTGGCTGCGGCAG
GAGCTGCTGATGGGGGGCGGCACCTGA

Upstream 100 bases:

>100_bases
GGCTCGTCCAGTTCATCGAGCACATCGCCCAGGGTGTCTTTCAGCGTCCATGTCAGGGCTACGACGCATTGCGGGGTGAT
TTTCATCCGACAATTGTCCC

Downstream 100 bases:

>100_bases
GGGGCTCGCCATCAATTCGAAGGACGAAGGAGACAGTCTCATGGATTCTCAAACAACACCGGCCGAGCCACCCATGTTGC
TGGAGGGGCGATTCAGCGGC

Product: cupin 4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MDVNHALDLLAGLSPARFMRQYWQKKPLLVRQAIPGFQPLLNRTDLFRLAGQEHVESRLIARQAQGWRMRQGPFARRSLP
PLSRDAWTLLVQGVDLHDARAHALLQKFRFVPDARLDDLMISFATPGGGVGPHFDSYDVFLLQASGRRRWKIGQQKDLTL
QQGVPLKILQNFEPDEEFVLEAGDMLYLPPRYAHDGIAEAVAGKVGEAADCMTYSIGFRAPGRSELAAELLHRLAEFSED
EPESSSGEGRRRASPSPKIYRDPRQAATATPAALPEGLARFAGQAVLEALKDPLALACALGEYMTEPKPSVWFEAPLQDW
VPDAVKAGKASIYLDARSRMMYDSDHVFINGESYRAKGTDAALMRRLADQRGLSAGDLRRASTAALALLADWHEAGWLRQ
ELLMGGGT

Sequences:

>Translated_408_residues
MDVNHALDLLAGLSPARFMRQYWQKKPLLVRQAIPGFQPLLNRTDLFRLAGQEHVESRLIARQAQGWRMRQGPFARRSLP
PLSRDAWTLLVQGVDLHDARAHALLQKFRFVPDARLDDLMISFATPGGGVGPHFDSYDVFLLQASGRRRWKIGQQKDLTL
QQGVPLKILQNFEPDEEFVLEAGDMLYLPPRYAHDGIAEAVAGKVGEAADCMTYSIGFRAPGRSELAAELLHRLAEFSED
EPESSSGEGRRRASPSPKIYRDPRQAATATPAALPEGLARFAGQAVLEALKDPLALACALGEYMTEPKPSVWFEAPLQDW
VPDAVKAGKASIYLDARSRMMYDSDHVFINGESYRAKGTDAALMRRLADQRGLSAGDLRRASTAALALLADWHEAGWLRQ
ELLMGGGT
>Mature_408_residues
MDVNHALDLLAGLSPARFMRQYWQKKPLLVRQAIPGFQPLLNRTDLFRLAGQEHVESRLIARQAQGWRMRQGPFARRSLP
PLSRDAWTLLVQGVDLHDARAHALLQKFRFVPDARLDDLMISFATPGGGVGPHFDSYDVFLLQASGRRRWKIGQQKDLTL
QQGVPLKILQNFEPDEEFVLEAGDMLYLPPRYAHDGIAEAVAGKVGEAADCMTYSIGFRAPGRSELAAELLHRLAEFSED
EPESSSGEGRRRASPSPKIYRDPRQAATATPAALPEGLARFAGQAVLEALKDPLALACALGEYMTEPKPSVWFEAPLQDW
VPDAVKAGKASIYLDARSRMMYDSDHVFINGESYRAKGTDAALMRRLADQRGLSAGDLRRASTAALALLADWHEAGWLRQ
ELLMGGGT

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=390, Percent_Identity=32.8205128205128, Blast_Score=179, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 45209; Mature: 45209

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVNHALDLLAGLSPARFMRQYWQKKPLLVRQAIPGFQPLLNRTDLFRLAGQEHVESRLI
CCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHCHHHHHHHHCHHHHHHHHH
ARQAQGWRMRQGPFARRSLPPLSRDAWTLLVQGVDLHDARAHALLQKFRFVPDARLDDLM
HHHHCCCCCCCCCCHHCCCCCCCCCHHHHEEECCCCHHHHHHHHHHHHHCCCCCCHHHEE
ISFATPGGGVGPHFDSYDVFLLQASGRRRWKIGQQKDLTLQQGVPLKILQNFEPDEEFVL
EEEECCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCHHHCCCCHHHHHCCCCCHHHHH
EAGDMLYLPPRYAHDGIAEAVAGKVGEAADCMTYSIGFRAPGRSELAAELLHRLAEFSED
CCCCEEEECCCHHHHHHHHHHHHCCCCHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCC
EPESSSGEGRRRASPSPKIYRDPRQAATATPAALPEGLARFAGQAVLEALKDPLALACAL
CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GEYMTEPKPSVWFEAPLQDWVPDAVKAGKASIYLDARSRMMYDSDHVFINGESYRAKGTD
HHHHCCCCCCCEEECCHHHHCCHHHHCCCCEEEEECCCCEEECCCEEEECCCCCCCCCCH
AALMRRLADQRGLSAGDLRRASTAALALLADWHEAGWLRQELLMGGGT
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDVNHALDLLAGLSPARFMRQYWQKKPLLVRQAIPGFQPLLNRTDLFRLAGQEHVESRLI
CCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHCHHHHHHHHCHHHHHHHHH
ARQAQGWRMRQGPFARRSLPPLSRDAWTLLVQGVDLHDARAHALLQKFRFVPDARLDDLM
HHHHCCCCCCCCCCHHCCCCCCCCCHHHHEEECCCCHHHHHHHHHHHHHCCCCCCHHHEE
ISFATPGGGVGPHFDSYDVFLLQASGRRRWKIGQQKDLTLQQGVPLKILQNFEPDEEFVL
EEEECCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCHHHCCCCHHHHHCCCCCHHHHH
EAGDMLYLPPRYAHDGIAEAVAGKVGEAADCMTYSIGFRAPGRSELAAELLHRLAEFSED
CCCCEEEECCCHHHHHHHHHHHHCCCCHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCC
EPESSSGEGRRRASPSPKIYRDPRQAATATPAALPEGLARFAGQAVLEALKDPLALACAL
CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GEYMTEPKPSVWFEAPLQDWVPDAVKAGKASIYLDARSRMMYDSDHVFINGESYRAKGTD
HHHHCCCCCCCEEECCHHHHCCHHHHCCCCEEEEECCCCEEECCCEEEECCCCCCCCCCH
AALMRRLADQRGLSAGDLRRASTAALALLADWHEAGWLRQELLMGGGT
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]