Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is 91788738
Identifier: 91788738
GI number: 91788738
Start: 3037464
End: 3038042
Strand: Reverse
Name: 91788738
Synonym: Bpro_2877
Alternate gene names: NA
Gene position: 3038042-3037464 (Counterclockwise)
Preceding gene: 91788739
Following gene: 91788737
Centisome position: 58.42
GC content: 60.62
Gene sequence:
>579_bases ATGACAAGCAAGATGGCTTTACGGCTTCAGCGATCCGCATCCGGAACGAGGGCGTCTCGCGGCTTTACCCTGATCGAGTT GCTGGTCAGCATGACCGTGCTCGGCATTCTGGCCGCCATCGCGGTGCCGTCATTCAACGAGGCTTTCCTGAGTAACCGGC TGGCGTCGTTCAGCAACTCCTTTATCGCGAGCGCCCAGCTCGCGCGCAGCGAGGCAATAAAGCGCAATGCCGTGGTCAAG ATGTGCCGATCGTCCAACGGCACAAGTTGCGCGACCGCGGGCGGTTGGCAGCAGGGTTGGATCATTTTCAGCGACAACGG CGCGGGTGGTAACGCCGACAACGGCACTGTGGACAGCGACGAGACTCGCATCTCCTATCAGCAAGCCCTTTCCACCGAGT ATTCCTTCACGGGCAACAATTATTCGATCGCTTTCCAACCGTCGGGCCTGGTCGCTTCGACTGTCAGCCTGAACTTGTGC CGCTTGGCGCCCTCTGCGGGATCGCAGGAGCGGACCATCGGCGTCGGCACGACGGGTCGTGTCTCGGTGAGCACGACCAG AACCGGCATTTGCTCGTAA
Upstream 100 bases:
>100_bases TTGGCTGTACCGGAGACTCGCCTCTCGAATCGAAGCAACCGACGACCTCGTCTTCAAGCACCATGCCCAAGGGGCGCCTC TACTGGTACCTTGAAAAGAA
Downstream 100 bases:
>100_bases ATAAATAATTCTTCAGTGGTTCTATCACATTAATTAAATCTTTTTTTCATTACTTTGGAGGATGTGGGTTTAGCACATTC TGGCTATCTTTCGGTATATG
Product: methylation
Products: NA
Alternate protein names: Fimbrial Pilin Related Signal Peptide Protein; Methylation; Pre-Pilin Like Leader Sequence; Pilus Assembly Protein; Type IV Pilus Assembly Protein FimT; Tfp Pilus Assembly Protein FimT-Like Protein; Tfp Pilus Assembly Protein FimT; TypeIV Fimbrial FimT-Related Pilin; Pilus Assambly Protein; Type IV Fimbrial Biogenesis Protein; Protein Involved In Methylation; Fimbrial Biogenesis Protein; Prokaryotic N-Terminal Methylation Motif Domain Protein; Type 4 Fimbrial Biogenesis Protein FimU; Type IV Pre-Pilin; Type IV Fimbrial Fimt-Related Pilin; Type-4 Fimbrial Pilin Related Protein
Number of amino acids: Translated: 192; Mature: 191
Protein sequence:
>192_residues MTSKMALRLQRSASGTRASRGFTLIELLVSMTVLGILAAIAVPSFNEAFLSNRLASFSNSFIASAQLARSEAIKRNAVVK MCRSSNGTSCATAGGWQQGWIIFSDNGAGGNADNGTVDSDETRISYQQALSTEYSFTGNNYSIAFQPSGLVASTVSLNLC RLAPSAGSQERTIGVGTTGRVSVSTTRTGICS
Sequences:
>Translated_192_residues MTSKMALRLQRSASGTRASRGFTLIELLVSMTVLGILAAIAVPSFNEAFLSNRLASFSNSFIASAQLARSEAIKRNAVVK MCRSSNGTSCATAGGWQQGWIIFSDNGAGGNADNGTVDSDETRISYQQALSTEYSFTGNNYSIAFQPSGLVASTVSLNLC RLAPSAGSQERTIGVGTTGRVSVSTTRTGICS >Mature_191_residues TSKMALRLQRSASGTRASRGFTLIELLVSMTVLGILAAIAVPSFNEAFLSNRLASFSNSFIASAQLARSEAIKRNAVVKM CRSSNGTSCATAGGWQQGWIIFSDNGAGGNADNGTVDSDETRISYQQALSTEYSFTGNNYSIAFQPSGLVASTVSLNLCR LAPSAGSQERTIGVGTTGRVSVSTTRTGICS
Specific function: Unknown
COG id: COG4970
COG function: function code NU; Tfp pilus assembly protein FimT
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20084; Mature: 19953
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSKMALRLQRSASGTRASRGFTLIELLVSMTVLGILAAIAVPSFNEAFLSNRLASFSNS CCCHHHEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH FIASAQLARSEAIKRNAVVKMCRSSNGTSCATAGGWQQGWIIFSDNGAGGNADNGTVDSD HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCC ETRISYQQALSTEYSFTGNNYSIAFQPSGLVASTVSLNLCRLAPSAGSQERTIGVGTTGR HHHHHHHHHHCCCEEECCCCEEEEECCCCCEEHHHEEEEEEECCCCCCCCCEEECCCCCE VSVSTTRTGICS EEEECCCCCCCC >Mature Secondary Structure TSKMALRLQRSASGTRASRGFTLIELLVSMTVLGILAAIAVPSFNEAFLSNRLASFSNS CCHHHEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH FIASAQLARSEAIKRNAVVKMCRSSNGTSCATAGGWQQGWIIFSDNGAGGNADNGTVDSD HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCC ETRISYQQALSTEYSFTGNNYSIAFQPSGLVASTVSLNLCRLAPSAGSQERTIGVGTTGR HHHHHHHHHHCCCEEECCCCEEEEECCCCCEEHHHEEEEEEECCCCCCCCCEEECCCCCE VSVSTTRTGICS EEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA