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The map label for this gene is ydfH [H]

Identifier: 91788616

GI number: 91788616

Start: 2895154

End: 2895849

Strand: Direct

Name: ydfH [H]

Synonym: Bpro_2754

Alternate gene names: 91788616

Gene position: 2895154-2895849 (Clockwise)

Preceding gene: 91788609

Following gene: 91788617

Centisome position: 55.67

GC content: 62.79

Gene sequence:

>696_bases
ATGTCCGCAAATGTCATTCCCATTCCGCGTGCCGCCCTGCATGAGCAGGTGGCGCACCGCCTGCGCGAGATGCTGGTGGA
AAACCGCATACCGCCCGGCGCCAAGCTCAACGAGCGGGAGCTGAGCGAAGTACTCAACGTTTCGCGCACGCCGCTTCGGG
AGGCGATCAAGATGCTGGCCGCCGAAGGGCTGGTCGAGCTGCTGCCCAACCGGGGAGCGATCGCGGTTGAGCTGACCGAA
GCCGATATATTGAATACCTTCGAGGTCATGTCGGGGCTGGAGGCCCAATCCGGCGAGCTGGCGGCCCAGCGCATCACCGA
GTCCGAACTGGCCGAGATCAAGGCCATGCATTACGAGATGCTGGCGGCCTACACGCGCCGCGACCTGCCGGGCTATTACC
GGCTCAATGCGGCCATTCACAACGCCATCAACGCCGCCGCCAAAAACCCAGTGCTCACGGCGACCTACAACCAGGTCAAC
GCCCGGCTTCAGGCGCTGCGTTTTCGCTCCAACCAGGACGGGGAAAAGTGGAAAGACGCCGTGAAAGAGCATGAACTGAT
GATTGAAGCGCTCAGTGCGCGCGACCCTGCTGCCATGCGCGCCGTGCTGGCCAGCCACCTGATCCACAAACAGGATGTGG
TGATCGAGCAGCTGCGCGCTGCCGGTAACACCCATCCTTCCGCAGCCAAAGCATGA

Upstream 100 bases:

>100_bases
AGGCAAGACCGTATTTTTTGCATACAAAATTCATTTGTCAACCTAACCAAGGGTAAACGATGGATTTGACAGCTACTTTT
TTTGCATACAGAATTTAACC

Downstream 100 bases:

>100_bases
ACGCTCCCCTCCCCCTCAAGATCACCCAGGAAGCAGCCGCCCGGGCCTACGACGATGTCGCGCGTGTCAGCAATGAAGTC
GCCGGCCGGCTGGCCGCCCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSANVIPIPRAALHEQVAHRLREMLVENRIPPGAKLNERELSEVLNVSRTPLREAIKMLAAEGLVELLPNRGAIAVELTE
ADILNTFEVMSGLEAQSGELAAQRITESELAEIKAMHYEMLAAYTRRDLPGYYRLNAAIHNAINAAAKNPVLTATYNQVN
ARLQALRFRSNQDGEKWKDAVKEHELMIEALSARDPAAMRAVLASHLIHKQDVVIEQLRAAGNTHPSAAKA

Sequences:

>Translated_231_residues
MSANVIPIPRAALHEQVAHRLREMLVENRIPPGAKLNERELSEVLNVSRTPLREAIKMLAAEGLVELLPNRGAIAVELTE
ADILNTFEVMSGLEAQSGELAAQRITESELAEIKAMHYEMLAAYTRRDLPGYYRLNAAIHNAINAAAKNPVLTATYNQVN
ARLQALRFRSNQDGEKWKDAVKEHELMIEALSARDPAAMRAVLASHLIHKQDVVIEQLRAAGNTHPSAAKA
>Mature_230_residues
SANVIPIPRAALHEQVAHRLREMLVENRIPPGAKLNERELSEVLNVSRTPLREAIKMLAAEGLVELLPNRGAIAVELTEA
DILNTFEVMSGLEAQSGELAAQRITESELAEIKAMHYEMLAAYTRRDLPGYYRLNAAIHNAINAAAKNPVLTATYNQVNA
RLQALRFRSNQDGEKWKDAVKEHELMIEALSARDPAAMRAVLASHLIHKQDVVIEQLRAAGNTHPSAAKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=199, Percent_Identity=27.1356783919598, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25503; Mature: 25371

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANVIPIPRAALHEQVAHRLREMLVENRIPPGAKLNERELSEVLNVSRTPLREAIKMLA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
AEGLVELLPNRGAIAVELTEADILNTFEVMSGLEAQSGELAAQRITESELAEIKAMHYEM
HHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAAYTRRDLPGYYRLNAAIHNAINAAAKNPVLTATYNQVNARLQALRFRSNQDGEKWKDA
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCHHHHHHH
VKEHELMIEALSARDPAAMRAVLASHLIHKQDVVIEQLRAAGNTHPSAAKA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SANVIPIPRAALHEQVAHRLREMLVENRIPPGAKLNERELSEVLNVSRTPLREAIKMLA
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
AEGLVELLPNRGAIAVELTEADILNTFEVMSGLEAQSGELAAQRITESELAEIKAMHYEM
HHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAAYTRRDLPGYYRLNAAIHNAINAAAKNPVLTATYNQVNARLQALRFRSNQDGEKWKDA
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCHHHHHHH
VKEHELMIEALSARDPAAMRAVLASHLIHKQDVVIEQLRAAGNTHPSAAKA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]