Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is yedY [H]
Identifier: 91788592
GI number: 91788592
Start: 2875557
End: 2876348
Strand: Direct
Name: yedY [H]
Synonym: Bpro_2730
Alternate gene names: 91788592
Gene position: 2875557-2876348 (Clockwise)
Preceding gene: 91788591
Following gene: 91788593
Centisome position: 55.3
GC content: 62.88
Gene sequence:
>792_bases ATGATCAAAACCCCTCCCCGCCTGGCCATTGACGGCGACGCCGTGCTCAAGGAAGCCGTGAGCCGAATCAGCCACGCCAG TCGCATCAGCGAGCCCGCCCGCCGCGACTTCCTGCGCCGCTCGCTCACGCTCGGCGGCCTGTCCATGCTCACGGGTTGCA CGCTGGTGGATGAAGCCAGCATAGACACGGCATTGATGCGGATTTCCCGCATGAATGACAAGGTGCAAGGCTGGCTGTTT GACCCCAACCGCCTGGCCCCCACCTACCCCGACTCGATGATCACGCGCCCCTTCCCCTTCAATGCCTACTACAACGAGAG CGAAGTGCGCCAGATCGAGGAAAGCAGCTACCGCCTGGAGGTCACCGGCCTCGTCGCCGACAAGCGCAAATGGGCGCTGC CGGAGCTGCGCGCCATGCCGCAGGTAGACCAAGTCACCCGCCACATCTGCGTCGAAGGCTGGAGCGCGATCGGCAAATGG GGCGGTGTGCCGTTTGCCAGCTTTCTGCGCCGGGTTGGTGCTGACCTGACTGCCAAATACGTCGGGTTCAAGTGCGCCGA CGACTACTTCACCAGCATCGACATGCCGACCGCCCTGCACCCGCAAACCGTGCTGGCGCTCACCTACGACGGGCAGCCGC TACCCCCCAAATACGGCTTTCCGATGAAGCTGCGCATGCCCACCAAGCTGGGCTACAAGAACCCCAAACATATCCAGGCG ATTTTCGTCACCAACACCTACCCTGGCGGCTACTGGGAAGACCAGGGCTACAACTGGTTCGGAGGTAGCTGA
Upstream 100 bases:
>100_bases GCCGCACTGGCCGCGTTTGTGGCGGTTCACCTGGTGATGGTGGCGCTGGTGCCGCGCACGCTGCTGTACATGGTTCGCGG CCGCTAAGGAGCCTGACGTG
Downstream 100 bases:
>100_bases GCCTGCTCAGAGACCCTGCAACGCCGGCAATAGCTGAATCATCGACTTCAGCGTTGCCGTTTTATTCAACAACTGATTCA TCACCACCAAGGAAACAACA
Product: molybdopterin-binding oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 263; Mature: 263
Protein sequence:
>263_residues MIKTPPRLAIDGDAVLKEAVSRISHASRISEPARRDFLRRSLTLGGLSMLTGCTLVDEASIDTALMRISRMNDKVQGWLF DPNRLAPTYPDSMITRPFPFNAYYNESEVRQIEESSYRLEVTGLVADKRKWALPELRAMPQVDQVTRHICVEGWSAIGKW GGVPFASFLRRVGADLTAKYVGFKCADDYFTSIDMPTALHPQTVLALTYDGQPLPPKYGFPMKLRMPTKLGYKNPKHIQA IFVTNTYPGGYWEDQGYNWFGGS
Sequences:
>Translated_263_residues MIKTPPRLAIDGDAVLKEAVSRISHASRISEPARRDFLRRSLTLGGLSMLTGCTLVDEASIDTALMRISRMNDKVQGWLF DPNRLAPTYPDSMITRPFPFNAYYNESEVRQIEESSYRLEVTGLVADKRKWALPELRAMPQVDQVTRHICVEGWSAIGKW GGVPFASFLRRVGADLTAKYVGFKCADDYFTSIDMPTALHPQTVLALTYDGQPLPPKYGFPMKLRMPTKLGYKNPKHIQA IFVTNTYPGGYWEDQGYNWFGGS >Mature_263_residues MIKTPPRLAIDGDAVLKEAVSRISHASRISEPARRDFLRRSLTLGGLSMLTGCTLVDEASIDTALMRISRMNDKVQGWLF DPNRLAPTYPDSMITRPFPFNAYYNESEVRQIEESSYRLEVTGLVADKRKWALPELRAMPQVDQVTRHICVEGWSAIGKW GGVPFASFLRRVGADLTAKYVGFKCADDYFTSIDMPTALHPQTVLALTYDGQPLPPKYGFPMKLRMPTKLGYKNPKHIQA IFVTNTYPGGYWEDQGYNWFGGS
Specific function: The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase
COG id: COG2041
COG function: function code R; Sulfite oxidase and related enzymes
Gene ontology:
Cell location: Periplasm. Note=Is attached to the inner membrane when interacting with the yedZ subunit (By similarity) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yedY family [H]
Homologues:
Organism=Escherichia coli, GI1788282, Length=162, Percent_Identity=27.1604938271605, Blast_Score=63, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000572 - InterPro: IPR006311 - InterPro: IPR022867 [H]
Pfam domain/function: PF00174 Oxidored_molyb [H]
EC number: NA
Molecular weight: Translated: 29648; Mature: 29648
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKTPPRLAIDGDAVLKEAVSRISHASRISEPARRDFLRRSLTLGGLSMLTGCTLVDEAS CCCCCCCEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCEECCCH IDTALMRISRMNDKVQGWLFDPNRLAPTYPDSMITRPFPFNAYYNESEVRQIEESSYRLE HHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCEEEE VTGLVADKRKWALPELRAMPQVDQVTRHICVEGWSAIGKWGGVPFASFLRRVGADLTAKY EEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEHH VGFKCADDYFTSIDMPTALHPQTVLALTYDGQPLPPKYGFPMKLRMPTKLGYKNPKHIQA HCEEECCHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCHHCCCCCCCEEEE IFVTNTYPGGYWEDQGYNWFGGS EEEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure MIKTPPRLAIDGDAVLKEAVSRISHASRISEPARRDFLRRSLTLGGLSMLTGCTLVDEAS CCCCCCCEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCEECCCH IDTALMRISRMNDKVQGWLFDPNRLAPTYPDSMITRPFPFNAYYNESEVRQIEESSYRLE HHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCEEEE VTGLVADKRKWALPELRAMPQVDQVTRHICVEGWSAIGKWGGVPFASFLRRVGADLTAKY EEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEHH VGFKCADDYFTSIDMPTALHPQTVLALTYDGQPLPPKYGFPMKLRMPTKLGYKNPKHIQA HCEEECCHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCHHCCCCCCCEEEE IFVTNTYPGGYWEDQGYNWFGGS EEEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Mo [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA