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The map label for this gene is ydfH [C]

Identifier: 91788164

GI number: 91788164

Start: 2387738

End: 2388463

Strand: Direct

Name: ydfH [C]

Synonym: Bpro_2295

Alternate gene names: 91788164

Gene position: 2387738-2388463 (Clockwise)

Preceding gene: 91788154

Following gene: 91788169

Centisome position: 45.92

GC content: 63.77

Gene sequence:

>726_bases
ATGGCCCGCTCACGACTGCAACTCCCTGAAATTCCTGCCAATTCCGCATTGACTGACAGGTCGGGCGGCCGGGGAATGAT
CAGCCAGGAAGCCTATGAAAGCATCCGCACGGCGATCCTCAACTGCTCATTCACACCGGGCATGGCGCTGTCGGAGCTGG
CCGTGTCAGAGGAGTTGGGTGTGAGCCGGGCACCGGTGCGCGATGCGTTTCGCCGCCTGGTTGGCGAAGGCCTGCTGGAG
GTCACGCCCCAGCGTGGCACGTTTGTCACGCGGCTGAGCCGGGCGCGCATTGAAGATGCCATCTTTGTGCGAGAGGCCAT
TGAATGCCTGGCGGCGGAACTGGCCTGCGAGGCGCCACTGGCGGAGCGCAAGAAGCTGCATGACGTGCTGGAGCGGCAGA
TTGCGGCTTCAGACCAGAAGGATTTTGGGGGCCACCTGAAAGCGGACGAAGACCTGCATTACCAGATACTGGTGCTGGCG
CGGCATCCGCATGCCTGGAATCCGCTGATGCTGGCACGCACGGGCATGAACCGGATCCGCCACATCGCCATCCCGGAGCT
GGGCGGCAACCGGATTGCCATTGAGCAGCACCGCCAGCTGGTGCGTGCGATTGTGGCCGGCGACCGCGCCAAGGCGCGGG
AAACGATGCTGCTGCACATCCGCTCGCCGCTGCGCTTTGTGGACACCATCAGCGAGCGGTACCCGGAGTACTTTGTGCAG
GAGTGA

Upstream 100 bases:

>100_bases
TTGGGCGGATGGATGGTTTCTCGGGTTATCGTACCGAAATTTCTTTGTAGTATTCTAGTATGCCAGAATACTACGAAAAT
CCAAGCAGTAAACTCACCCC

Downstream 100 bases:

>100_bases
GATGAGGTTCTATCGCCCCTTGGCCTTGCGCCAGGCGGCGAAGTCGTCCTTCGATTGCTGCTCGGTGGGTGGATACAGGC
CAATGATGGGCCGGCCCTTC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MARSRLQLPEIPANSALTDRSGGRGMISQEAYESIRTAILNCSFTPGMALSELAVSEELGVSRAPVRDAFRRLVGEGLLE
VTPQRGTFVTRLSRARIEDAIFVREAIECLAAELACEAPLAERKKLHDVLERQIAASDQKDFGGHLKADEDLHYQILVLA
RHPHAWNPLMLARTGMNRIRHIAIPELGGNRIAIEQHRQLVRAIVAGDRAKARETMLLHIRSPLRFVDTISERYPEYFVQ
E

Sequences:

>Translated_241_residues
MARSRLQLPEIPANSALTDRSGGRGMISQEAYESIRTAILNCSFTPGMALSELAVSEELGVSRAPVRDAFRRLVGEGLLE
VTPQRGTFVTRLSRARIEDAIFVREAIECLAAELACEAPLAERKKLHDVLERQIAASDQKDFGGHLKADEDLHYQILVLA
RHPHAWNPLMLARTGMNRIRHIAIPELGGNRIAIEQHRQLVRAIVAGDRAKARETMLLHIRSPLRFVDTISERYPEYFVQ
E
>Mature_240_residues
ARSRLQLPEIPANSALTDRSGGRGMISQEAYESIRTAILNCSFTPGMALSELAVSEELGVSRAPVRDAFRRLVGEGLLEV
TPQRGTFVTRLSRARIEDAIFVREAIECLAAELACEAPLAERKKLHDVLERQIAASDQKDFGGHLKADEDLHYQILVLAR
HPHAWNPLMLARTGMNRIRHIAIPELGGNRIAIEQHRQLVRAIVAGDRAKARETMLLHIRSPLRFVDTISERYPEYFVQE

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=217, Percent_Identity=28.110599078341, Blast_Score=106, Evalue=1e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27049; Mature: 26917

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSRLQLPEIPANSALTDRSGGRGMISQEAYESIRTAILNCSFTPGMALSELAVSEELG
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
VSRAPVRDAFRRLVGEGLLEVTPQRGTFVTRLSRARIEDAIFVREAIECLAAELACEAPL
CCCCCHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AERKKLHDVLERQIAASDQKDFGGHLKADEDLHYQILVLARHPHAWNPLMLARTGMNRIR
HHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
HIAIPELGGNRIAIEQHRQLVRAIVAGDRAKARETMLLHIRSPLRFVDTISERYPEYFVQ
EEECCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC
E
C
>Mature Secondary Structure 
ARSRLQLPEIPANSALTDRSGGRGMISQEAYESIRTAILNCSFTPGMALSELAVSEELG
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
VSRAPVRDAFRRLVGEGLLEVTPQRGTFVTRLSRARIEDAIFVREAIECLAAELACEAPL
CCCCCHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AERKKLHDVLERQIAASDQKDFGGHLKADEDLHYQILVLARHPHAWNPLMLARTGMNRIR
HHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
HIAIPELGGNRIAIEQHRQLVRAIVAGDRAKARETMLLHIRSPLRFVDTISERYPEYFVQ
EEECCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]