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The map label for this gene is mdcF [H]

Identifier: 91787566

GI number: 91787566

Start: 1736866

End: 1737855

Strand: Direct

Name: mdcF [H]

Synonym: Bpro_1684

Alternate gene names: 91787566

Gene position: 1736866-1737855 (Clockwise)

Preceding gene: 91787565

Following gene: 91787567

Centisome position: 33.4

GC content: 63.54

Gene sequence:

>990_bases
GTGGAGGGCGCGCTAAGATTGCCCCGGATGAACCAGCCTGTCTTTGTGTCCCTGCTCCCGGTTGTCTTGTTGATTGCTGC
AGGTTTTATAGCTGGTCGCGCAGGCTGGATAAGGCCTGTGGCCATTAAAGATCTTTCCAACCTGGTGTTTCTGCTGCTCA
CGCCGGCGCTGCTGTTTCGCACCATGAGCCGTGTGCGCGTCGAGCAACTTGACTTCAAGCCGGTCGCCGCGTATTTCCTG
GCCGTCATCATCCTGTTCAGCGGTACGCTGCTGGTGCAGGGCTTCAACCGCCGCGCCGCCGTGCTGGCGCTGGCCAACAC
GTTCTCCAACACGGTCATGATCGGCATTGCGCTGGTCGGCCTGATGTACGGGCCCGCAGGCTTGGTCACGCTGCTCACGC
TGGTTTCCGTGCATTCACTCGTGTTGCTGACAAGCGCTACCGTGGTGCTCGAGCTGGCTGTGGCCTACGAGCAGAAGCAG
GGTACCTCCGACGAGGTCACGACGGCACCGCGCCACCCGGTGGCCACGGTGCTGATGGCCGTGAAAAACGCATTGCTGCA
CCCGGTGCCGCTGCCCATCATCGCGGGCCTGCTGTTTGCGCAGACCGGGCTGGCGATTCCCGCCGTGATCGACAAGCCGC
TGGAGTTGCTGGCCAATGCCTTCGGACCGCTCGCGCTGGTGCTGGTGGGTGTGACGCTGGCCTACACGCCTGTAGGCAGG
CACTGGCGCCAGGCGCTGTTGCTGGCCGGGGTGAAGAACCTGTTGCATCCCTTGCTGGTGTTTGCCCTGTGCCATCTGCT
GGGGGTAGGCGGCGTGCCCATGGCCGTGATGGTGGTGGCGGCCGCCTTGCCGATTGGCGCCAATGTGTTTTTGTTTTCGC
AGCGCTACAAGGTCGCCGAAGAACTGACCACGGCCAGCGTGGCGGTTTCCACCGTGCTGGCGCTGCTGACCCTGACCGTG
GTGCTGCTGCTGGTCGGGCATCCCGTGTGA

Upstream 100 bases:

>100_bases
AGCACCTTTGCCGGGTCGCAGTCTGAAGGTGGGACTGCAGGTCGCCTTTTAAGCGCAGGCAGATAGAGCACCAGGAGGCG
GGACACCAGGAGCGCGCGCG

Downstream 100 bases:

>100_bases
AATTTGAAGAATAGGAGCGTGATCTGATGCAATTCCTGCAATCGTTTCCGGTGCCCGCCCAGGCCATTGGATTGTTGCTG
CTGTCCAATGTGTTCATGAC

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MEGALRLPRMNQPVFVSLLPVVLLIAAGFIAGRAGWIRPVAIKDLSNLVFLLLTPALLFRTMSRVRVEQLDFKPVAAYFL
AVIILFSGTLLVQGFNRRAAVLALANTFSNTVMIGIALVGLMYGPAGLVTLLTLVSVHSLVLLTSATVVLELAVAYEQKQ
GTSDEVTTAPRHPVATVLMAVKNALLHPVPLPIIAGLLFAQTGLAIPAVIDKPLELLANAFGPLALVLVGVTLAYTPVGR
HWRQALLLAGVKNLLHPLLVFALCHLLGVGGVPMAVMVVAAALPIGANVFLFSQRYKVAEELTTASVAVSTVLALLTLTV
VLLLVGHPV

Sequences:

>Translated_329_residues
MEGALRLPRMNQPVFVSLLPVVLLIAAGFIAGRAGWIRPVAIKDLSNLVFLLLTPALLFRTMSRVRVEQLDFKPVAAYFL
AVIILFSGTLLVQGFNRRAAVLALANTFSNTVMIGIALVGLMYGPAGLVTLLTLVSVHSLVLLTSATVVLELAVAYEQKQ
GTSDEVTTAPRHPVATVLMAVKNALLHPVPLPIIAGLLFAQTGLAIPAVIDKPLELLANAFGPLALVLVGVTLAYTPVGR
HWRQALLLAGVKNLLHPLLVFALCHLLGVGGVPMAVMVVAAALPIGANVFLFSQRYKVAEELTTASVAVSTVLALLTLTV
VLLLVGHPV
>Mature_329_residues
MEGALRLPRMNQPVFVSLLPVVLLIAAGFIAGRAGWIRPVAIKDLSNLVFLLLTPALLFRTMSRVRVEQLDFKPVAAYFL
AVIILFSGTLLVQGFNRRAAVLALANTFSNTVMIGIALVGLMYGPAGLVTLLTLVSVHSLVLLTSATVVLELAVAYEQKQ
GTSDEVTTAPRHPVATVLMAVKNALLHPVPLPIIAGLLFAQTGLAIPAVIDKPLELLANAFGPLALVLVGVTLAYTPVGR
HWRQALLLAGVKNLLHPLLVFALCHLLGVGGVPMAVMVVAAALPIGANVFLFSQRYKVAEELTTASVAVSTVLALLTLTV
VLLLVGHPV

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 34761; Mature: 34761

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGALRLPRMNQPVFVSLLPVVLLIAAGFIAGRAGWIRPVAIKDLSNLVFLLLTPALLFR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TMSRVRVEQLDFKPVAAYFLAVIILFSGTLLVQGFNRRAAVLALANTFSNTVMIGIALVG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHH
LMYGPAGLVTLLTLVSVHSLVLLTSATVVLELAVAYEQKQGTSDEVTTAPRHPVATVLMA
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
VKNALLHPVPLPIIAGLLFAQTGLAIPAVIDKPLELLANAFGPLALVLVGVTLAYTPVGR
HHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
HWRQALLLAGVKNLLHPLLVFALCHLLGVGGVPMAVMVVAAALPIGANVFLFSQRYKVAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHH
ELTTASVAVSTVLALLTLTVVLLLVGHPV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEGALRLPRMNQPVFVSLLPVVLLIAAGFIAGRAGWIRPVAIKDLSNLVFLLLTPALLFR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TMSRVRVEQLDFKPVAAYFLAVIILFSGTLLVQGFNRRAAVLALANTFSNTVMIGIALVG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHH
LMYGPAGLVTLLTLVSVHSLVLLTSATVVLELAVAYEQKQGTSDEVTTAPRHPVATVLMA
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
VKNALLHPVPLPIIAGLLFAQTGLAIPAVIDKPLELLANAFGPLALVLVGVTLAYTPVGR
HHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
HWRQALLLAGVKNLLHPLLVFALCHLLGVGGVPMAVMVVAAALPIGANVFLFSQRYKVAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHH
ELTTASVAVSTVLALLTLTVVLLLVGHPV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]