Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is yncE [C]
Identifier: 91787077
GI number: 91787077
Start: 1219845
End: 1220891
Strand: Direct
Name: yncE [C]
Synonym: Bpro_1180
Alternate gene names: 91787077
Gene position: 1219845-1220891 (Clockwise)
Preceding gene: 91787076
Following gene: 91787078
Centisome position: 23.46
GC content: 65.62
Gene sequence:
>1047_bases ATGGTCGCAAGAAAGAATCTGTGGTGGTTGGCGGTGCTGCAGGCCGGGCTGCTGGTTTGGGCGAGCGCTGCGCCGGCCGC CGACAAGGTGTATGTGGCGAACGAGCGGGCTGACACGATCAGTGTGCTGGATGCCGCGTCGTTCAGGGTGGTGGCAAGCG TGCGCGTTGGCAGGATGCCGCATAACGTGCAGGTGTCGCCCGATGGCCAGACCGTTTGGGTGACCAACAATGGCGAACCC GGCCGGGCGGCCGACGCCCCGGCGCACCAGGGCATGGACCCGGGCGCACACGATGCGATGGTGAAGGCCGGGGCCGTCTG GGCCATAGACACGCGCAGCGATACGGTCGTTGCGAAGGTGCCGGTGGGCCTGCACCCGGCCCACGTCGTGCTGACGCCGG ACGGCCGCTTCGCCTATGTGACCAACGGGGGCGACAACACGGTGAGTGTGGTGGATACCGCGGCGCGGCGGGTGGTGGAG ACGATTCCGGTGGGCGAGTATCCGCACGGTATTCGAATCAGCCCGGATGGCAGTCAGGCCTACGTTGCCAACCTGAAGGA CGGAACGGTGTCGGTGATTGATACCACCAGCAAGTTGGAGATGCTGAGAATTCCGGTAGGCAAGGGTCCGGCCCAGGTCG GTTTCACGCCGGACGGTCGTCTCGCCTTCGTCTCGCTGTCGGAAGAAAATGCGGTCGCCGTCATCGACCCGGTCGCGCGC AAGGTCACCCGCAAGATAGTGGTGGGTGCGGTTCCCATTCAGCTCTACGCGACGCCGGACTCCCGCACGTTGCTGGTGGC CAATCAGGGCACGCGCCAGAAGCCCGGCAAGACCCTCAGCATGATCGACCTCCAGAGCCTGACCGTCGCGAAGACCGTCG AGACCGGCGCCGGCGCCCATGGCGTGGTGATAGACCGTGACGGCCGCTATGCCTACGTCACGAATACCTGGGCCAATTCA GTGTCCGTGCTTGACGTGAAGGACCGCAAGGTCGTTGCAACGGTTCGCGTGGGCAAGGGGCCCAACGGGATCAGCGTGGC GCCCTGA
Upstream 100 bases:
>100_bases GTCAGGGATCCGGCGAATGTTTTTTGAGGAACGGCGCAGGACTGCAGGGGCTGTGCCGCGCAGAGTATCGGTGTTGGTTT GGTCTTAACCAGGGGAGATC
Downstream 100 bases:
>100_bases GGCCCTGAGGCCCTGACGCCTGTCTCCGCGCCGTGGACGCTGGCGTGGCTTGATGCATGTCAAGCCGGCTGGCGCCCGGC GTCTTTAGTATCAGATCATT
Product: YVTN beta-propeller repeat-containing protein
Products: NA
Alternate protein names: 40-Residue YVTN Family Beta-Propeller Repeat Protein; Surface Antigen Gene; Surface Layer Protein; YVTN Family Beta-Propeller Repeat Protein; Cell Surface Protein; Cytochrome D1 Heme Region; 40-Residue Yvtn Family Beta-Propeller Repeat Protein; Beta-Propeller Repeat-Containing Protein; Yvtn Beta-Propeller Repeat-Containing Protein; Beta-Propeller Fold Protein; Surface Antigen; Triple Helix Repeat-Containing Collagen; Signal Peptide Protein; Yvtn Beta-Propeller Repeat Family Protein; Outer Membrane Protein; Glycine-Rich Cell Wall Protein; YVTN Beta-Propeller Repeat Family Protein; PGRS-Subfamily Gly-Rich Protein; IPT/TIG Domain Protein; Vegetative Incompatibility; Signal Peptide; Beta-Propeller Repeat Protein YVTN Family; LOW QUALITY PROTEIN Surface Antigen Protein; Surface Antigen-Like Protein; Alkaline Serine Protease; Cytochrome D1 Heme Subunit; Serine/Threonine Protein Kinase; YVTN Family Beta-Propeller Repeat-Containing Protein; Alpha-1 2-Mannosidase; SGL Domain-Containing Protein; Lipoprotein; Exported Protein; YVTN Family Beta-Propeller Repeat Family Protein
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MVARKNLWWLAVLQAGLLVWASAAPAADKVYVANERADTISVLDAASFRVVASVRVGRMPHNVQVSPDGQTVWVTNNGEP GRAADAPAHQGMDPGAHDAMVKAGAVWAIDTRSDTVVAKVPVGLHPAHVVLTPDGRFAYVTNGGDNTVSVVDTAARRVVE TIPVGEYPHGIRISPDGSQAYVANLKDGTVSVIDTTSKLEMLRIPVGKGPAQVGFTPDGRLAFVSLSEENAVAVIDPVAR KVTRKIVVGAVPIQLYATPDSRTLLVANQGTRQKPGKTLSMIDLQSLTVAKTVETGAGAHGVVIDRDGRYAYVTNTWANS VSVLDVKDRKVVATVRVGKGPNGISVAP
Sequences:
>Translated_348_residues MVARKNLWWLAVLQAGLLVWASAAPAADKVYVANERADTISVLDAASFRVVASVRVGRMPHNVQVSPDGQTVWVTNNGEP GRAADAPAHQGMDPGAHDAMVKAGAVWAIDTRSDTVVAKVPVGLHPAHVVLTPDGRFAYVTNGGDNTVSVVDTAARRVVE TIPVGEYPHGIRISPDGSQAYVANLKDGTVSVIDTTSKLEMLRIPVGKGPAQVGFTPDGRLAFVSLSEENAVAVIDPVAR KVTRKIVVGAVPIQLYATPDSRTLLVANQGTRQKPGKTLSMIDLQSLTVAKTVETGAGAHGVVIDRDGRYAYVTNTWANS VSVLDVKDRKVVATVRVGKGPNGISVAP >Mature_348_residues MVARKNLWWLAVLQAGLLVWASAAPAADKVYVANERADTISVLDAASFRVVASVRVGRMPHNVQVSPDGQTVWVTNNGEP GRAADAPAHQGMDPGAHDAMVKAGAVWAIDTRSDTVVAKVPVGLHPAHVVLTPDGRFAYVTNGGDNTVSVVDTAARRVVE TIPVGEYPHGIRISPDGSQAYVANLKDGTVSVIDTTSKLEMLRIPVGKGPAQVGFTPDGRLAFVSLSEENAVAVIDPVAR KVTRKIVVGAVPIQLYATPDSRTLLVANQGTRQKPGKTLSMIDLQSLTVAKTVETGAGAHGVVIDRDGRYAYVTNTWANS VSVLDVKDRKVVATVRVGKGPNGISVAP
Specific function: Unknown
COG id: COG3391
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36607; Mature: 36607
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVARKNLWWLAVLQAGLLVWASAAPAADKVYVANERADTISVLDAASFRVVASVRVGRMP CCCCCCCHHHHHHHHCCEEEECCCCCCCEEEEECCCCCEEEEEECCCEEEEEEEEECCCC HNVQVSPDGQTVWVTNNGEPGRAADAPAHQGMDPGAHDAMVKAGAVWAIDTRSDTVVAKV CCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHEECCEEEEEECCCCEEEEEE PVGLHPAHVVLTPDGRFAYVTNGGDNTVSVVDTAARRVVETIPVGEYPHGIRISPDGSQA CCCCCCEEEEECCCCCEEEEECCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEECCCCCCE YVANLKDGTVSVIDTTSKLEMLRIPVGKGPAQVGFTPDGRLAFVSLSEENAVAVIDPVAR EEEECCCCEEEEEECCCCEEEEEEECCCCCCEECCCCCCCEEEEEECCCCCEEEECHHHH KVTRKIVVGAVPIQLYATPDSRTLLVANQGTRQKPGKTLSMIDLQSLTVAKTVETGAGAH HHHHEEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCC GVVIDRDGRYAYVTNTWANSVSVLDVKDRKVVATVRVGKGPNGISVAP EEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCCCC >Mature Secondary Structure MVARKNLWWLAVLQAGLLVWASAAPAADKVYVANERADTISVLDAASFRVVASVRVGRMP CCCCCCCHHHHHHHHCCEEEECCCCCCCEEEEECCCCCEEEEEECCCEEEEEEEEECCCC HNVQVSPDGQTVWVTNNGEPGRAADAPAHQGMDPGAHDAMVKAGAVWAIDTRSDTVVAKV CCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHEECCEEEEEECCCCEEEEEE PVGLHPAHVVLTPDGRFAYVTNGGDNTVSVVDTAARRVVETIPVGEYPHGIRISPDGSQA CCCCCCEEEEECCCCCEEEEECCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEECCCCCCE YVANLKDGTVSVIDTTSKLEMLRIPVGKGPAQVGFTPDGRLAFVSLSEENAVAVIDPVAR EEEECCCCEEEEEECCCCEEEEEEECCCCCCEECCCCCCCEEEEEECCCCCEEEECHHHH KVTRKIVVGAVPIQLYATPDSRTLLVANQGTRQKPGKTLSMIDLQSLTVAKTVETGAGAH HHHHEEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCC GVVIDRDGRYAYVTNTWANSVSVLDVKDRKVVATVRVGKGPNGISVAP EEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA