Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is 91787000

Identifier: 91787000

GI number: 91787000

Start: 1135520

End: 1136611

Strand: Direct

Name: 91787000

Synonym: Bpro_1102

Alternate gene names: NA

Gene position: 1135520-1136611 (Clockwise)

Preceding gene: 91786999

Following gene: 91787001

Centisome position: 21.84

GC content: 64.19

Gene sequence:

>1092_bases
ATGAGCCTGATTACCCGCTGCCCCGCGTGCGGCACGATGTTCAAGGTCGTGACCGATCAACTCAAAGTCTCTCAGGGCTG
GGTACGGTGCGGGCATTGTGCTGAAGTGTTTGATGCCTCAGTGCACCTGCTGCCGGGGGAAGCGGCGGGGCTGCCGCCCT
CGGCTTTCACCCCCGATCAGGAGCCAGTGTTCCGGGTGGCAGCTTCGACGCTGGACACCCACGAGCCGGCGCAGGCGAGC
GAATCGACAGCGGATCCTTCCTGGGCACCCGCCCGGGCGTTTGCCGACAGGGTGCCGCTGACTCCTTTTCTTTCCGGGCA
GGACGCGCAGGAACACGACAGCATCGCCGATTTTGATCCCGCCAGCTGGAAGCTGGCGCTTCACGAGCGCCAGCAGCTCG
ACAGCGAGCCCGCTCAGGCCAATGTCGAGCCAGAGGACACGCCGCCGCGCCGGCCGGATCTGGTGCATACGGCGACTGCG
GAGGAGGCCGAATTCGAGTCTTCGGAAATACCGGCTTCCGGGATTTCGGACGATGTTTCCTTTGTTCGTGCTGCGCGGCG
CCGGGCCTTCTGGAAAACGCCGGTAGCACGCTGGTCACTTGGTGTACTGGCTCTTTTGCTGATGACCGCGCTGGCGATTC
AATGGCTGGTACAGCAAAAAGACAACCTGGCCGCGCTGGACCCTCGGCTCGGTTCCCTGCTGCAGACGGTTTGCGGGCAG
TTGCGCTGTGAAATTCGCGCGCCGCGCCATATCGACTCCCTGGTGATCGACAGCTCGAGCTTCAACAGAATCGGCCCGGA
TGCGTACCGCCTCAGTTTTGTCCTCAAGAATACGGGAACCATTCCGCTGGAAGTACCCTCTCTGGAAGTCACCCTGACCG
ATACCCAGGACCGGGCGGTGGTACGCCGCGTCCTGACACCCGCGCAGTTTGGCGCGACCGCCACCACGCTGGGCGCCCGC
TCGGAACTGGCCGGCGCCCTGAGCATGAAAGTGGCGGGGGACGGTGTTCGCAGTGCCTCGCCGGCGCCGTCATCCACATC
ACCGGCGTCTTGGCGTGTGGCCGGTTACCGAGTCCTTGCTTTCTACCCCTGA

Upstream 100 bases:

>100_bases
GAAGAGGGCTGGATCCTGATGGGCGCGCGGTTTTAAGCCCCGTCAATCAGATGCCGTTCGGCCGGCCTGCCGGCAACGAC
CCCCTACAATACGGCGCTAG

Downstream 100 bases:

>100_bases
TGACCCTCTTACCCCTGATTGAATCGAGAACTGAATGTCTGCTGTGATTTGTGGCTCCCTGGCGTTTGACACCATCATGA
CCTTTGAGGGTCGCTTTTCC

Product: Zinc finger/thioredoxin

Products: NA

Alternate protein names: Zinc Finger/Thioredoxin

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MSLITRCPACGTMFKVVTDQLKVSQGWVRCGHCAEVFDASVHLLPGEAAGLPPSAFTPDQEPVFRVAASTLDTHEPAQAS
ESTADPSWAPARAFADRVPLTPFLSGQDAQEHDSIADFDPASWKLALHERQQLDSEPAQANVEPEDTPPRRPDLVHTATA
EEAEFESSEIPASGISDDVSFVRAARRRAFWKTPVARWSLGVLALLLMTALAIQWLVQQKDNLAALDPRLGSLLQTVCGQ
LRCEIRAPRHIDSLVIDSSSFNRIGPDAYRLSFVLKNTGTIPLEVPSLEVTLTDTQDRAVVRRVLTPAQFGATATTLGAR
SELAGALSMKVAGDGVRSASPAPSSTSPASWRVAGYRVLAFYP

Sequences:

>Translated_363_residues
MSLITRCPACGTMFKVVTDQLKVSQGWVRCGHCAEVFDASVHLLPGEAAGLPPSAFTPDQEPVFRVAASTLDTHEPAQAS
ESTADPSWAPARAFADRVPLTPFLSGQDAQEHDSIADFDPASWKLALHERQQLDSEPAQANVEPEDTPPRRPDLVHTATA
EEAEFESSEIPASGISDDVSFVRAARRRAFWKTPVARWSLGVLALLLMTALAIQWLVQQKDNLAALDPRLGSLLQTVCGQ
LRCEIRAPRHIDSLVIDSSSFNRIGPDAYRLSFVLKNTGTIPLEVPSLEVTLTDTQDRAVVRRVLTPAQFGATATTLGAR
SELAGALSMKVAGDGVRSASPAPSSTSPASWRVAGYRVLAFYP
>Mature_362_residues
SLITRCPACGTMFKVVTDQLKVSQGWVRCGHCAEVFDASVHLLPGEAAGLPPSAFTPDQEPVFRVAASTLDTHEPAQASE
STADPSWAPARAFADRVPLTPFLSGQDAQEHDSIADFDPASWKLALHERQQLDSEPAQANVEPEDTPPRRPDLVHTATAE
EAEFESSEIPASGISDDVSFVRAARRRAFWKTPVARWSLGVLALLLMTALAIQWLVQQKDNLAALDPRLGSLLQTVCGQL
RCEIRAPRHIDSLVIDSSSFNRIGPDAYRLSFVLKNTGTIPLEVPSLEVTLTDTQDRAVVRRVLTPAQFGATATTLGARS
ELAGALSMKVAGDGVRSASPAPSSTSPASWRVAGYRVLAFYP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39147; Mature: 39016

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS00850 GLY_RADICAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLITRCPACGTMFKVVTDQLKVSQGWVRCGHCAEVFDASVHLLPGEAAGLPPSAFTPDQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEECCCCCCCCCCCCCCCC
EPVFRVAASTLDTHEPAQASESTADPSWAPARAFADRVPLTPFLSGQDAQEHDSIADFDP
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCC
ASWKLALHERQQLDSEPAQANVEPEDTPPRRPDLVHTATAEEAEFESSEIPASGISDDVS
CCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCCCCCHHHH
FVRAARRRAFWKTPVARWSLGVLALLLMTALAIQWLVQQKDNLAALDPRLGSLLQTVCGQ
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
LRCEIRAPRHIDSLVIDSSSFNRIGPDAYRLSFVLKNTGTIPLEVPSLEVTLTDTQDRAV
HEEECCCCCCHHHEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCEEEEEECCHHHHH
VRRVLTPAQFGATATTLGARSELAGALSMKVAGDGVRSASPAPSSTSPASWRVAGYRVLA
HHHHHCHHHHCCHHHHHCCHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEE
FYP
ECC
>Mature Secondary Structure 
SLITRCPACGTMFKVVTDQLKVSQGWVRCGHCAEVFDASVHLLPGEAAGLPPSAFTPDQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEECCCCCCCCCCCCCCCC
EPVFRVAASTLDTHEPAQASESTADPSWAPARAFADRVPLTPFLSGQDAQEHDSIADFDP
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCC
ASWKLALHERQQLDSEPAQANVEPEDTPPRRPDLVHTATAEEAEFESSEIPASGISDDVS
CCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCCCCCHHHH
FVRAARRRAFWKTPVARWSLGVLALLLMTALAIQWLVQQKDNLAALDPRLGSLLQTVCGQ
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
LRCEIRAPRHIDSLVIDSSSFNRIGPDAYRLSFVLKNTGTIPLEVPSLEVTLTDTQDRAV
HEEECCCCCCHHHEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCEEEEEECCHHHHH
VRRVLTPAQFGATATTLGARSELAGALSMKVAGDGVRSASPAPSSTSPASWRVAGYRVLA
HHHHHCHHHHCCHHHHHCCHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEE
FYP
ECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA