Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is 91787000
Identifier: 91787000
GI number: 91787000
Start: 1135520
End: 1136611
Strand: Direct
Name: 91787000
Synonym: Bpro_1102
Alternate gene names: NA
Gene position: 1135520-1136611 (Clockwise)
Preceding gene: 91786999
Following gene: 91787001
Centisome position: 21.84
GC content: 64.19
Gene sequence:
>1092_bases ATGAGCCTGATTACCCGCTGCCCCGCGTGCGGCACGATGTTCAAGGTCGTGACCGATCAACTCAAAGTCTCTCAGGGCTG GGTACGGTGCGGGCATTGTGCTGAAGTGTTTGATGCCTCAGTGCACCTGCTGCCGGGGGAAGCGGCGGGGCTGCCGCCCT CGGCTTTCACCCCCGATCAGGAGCCAGTGTTCCGGGTGGCAGCTTCGACGCTGGACACCCACGAGCCGGCGCAGGCGAGC GAATCGACAGCGGATCCTTCCTGGGCACCCGCCCGGGCGTTTGCCGACAGGGTGCCGCTGACTCCTTTTCTTTCCGGGCA GGACGCGCAGGAACACGACAGCATCGCCGATTTTGATCCCGCCAGCTGGAAGCTGGCGCTTCACGAGCGCCAGCAGCTCG ACAGCGAGCCCGCTCAGGCCAATGTCGAGCCAGAGGACACGCCGCCGCGCCGGCCGGATCTGGTGCATACGGCGACTGCG GAGGAGGCCGAATTCGAGTCTTCGGAAATACCGGCTTCCGGGATTTCGGACGATGTTTCCTTTGTTCGTGCTGCGCGGCG CCGGGCCTTCTGGAAAACGCCGGTAGCACGCTGGTCACTTGGTGTACTGGCTCTTTTGCTGATGACCGCGCTGGCGATTC AATGGCTGGTACAGCAAAAAGACAACCTGGCCGCGCTGGACCCTCGGCTCGGTTCCCTGCTGCAGACGGTTTGCGGGCAG TTGCGCTGTGAAATTCGCGCGCCGCGCCATATCGACTCCCTGGTGATCGACAGCTCGAGCTTCAACAGAATCGGCCCGGA TGCGTACCGCCTCAGTTTTGTCCTCAAGAATACGGGAACCATTCCGCTGGAAGTACCCTCTCTGGAAGTCACCCTGACCG ATACCCAGGACCGGGCGGTGGTACGCCGCGTCCTGACACCCGCGCAGTTTGGCGCGACCGCCACCACGCTGGGCGCCCGC TCGGAACTGGCCGGCGCCCTGAGCATGAAAGTGGCGGGGGACGGTGTTCGCAGTGCCTCGCCGGCGCCGTCATCCACATC ACCGGCGTCTTGGCGTGTGGCCGGTTACCGAGTCCTTGCTTTCTACCCCTGA
Upstream 100 bases:
>100_bases GAAGAGGGCTGGATCCTGATGGGCGCGCGGTTTTAAGCCCCGTCAATCAGATGCCGTTCGGCCGGCCTGCCGGCAACGAC CCCCTACAATACGGCGCTAG
Downstream 100 bases:
>100_bases TGACCCTCTTACCCCTGATTGAATCGAGAACTGAATGTCTGCTGTGATTTGTGGCTCCCTGGCGTTTGACACCATCATGA CCTTTGAGGGTCGCTTTTCC
Product: Zinc finger/thioredoxin
Products: NA
Alternate protein names: Zinc Finger/Thioredoxin
Number of amino acids: Translated: 363; Mature: 362
Protein sequence:
>363_residues MSLITRCPACGTMFKVVTDQLKVSQGWVRCGHCAEVFDASVHLLPGEAAGLPPSAFTPDQEPVFRVAASTLDTHEPAQAS ESTADPSWAPARAFADRVPLTPFLSGQDAQEHDSIADFDPASWKLALHERQQLDSEPAQANVEPEDTPPRRPDLVHTATA EEAEFESSEIPASGISDDVSFVRAARRRAFWKTPVARWSLGVLALLLMTALAIQWLVQQKDNLAALDPRLGSLLQTVCGQ LRCEIRAPRHIDSLVIDSSSFNRIGPDAYRLSFVLKNTGTIPLEVPSLEVTLTDTQDRAVVRRVLTPAQFGATATTLGAR SELAGALSMKVAGDGVRSASPAPSSTSPASWRVAGYRVLAFYP
Sequences:
>Translated_363_residues MSLITRCPACGTMFKVVTDQLKVSQGWVRCGHCAEVFDASVHLLPGEAAGLPPSAFTPDQEPVFRVAASTLDTHEPAQAS ESTADPSWAPARAFADRVPLTPFLSGQDAQEHDSIADFDPASWKLALHERQQLDSEPAQANVEPEDTPPRRPDLVHTATA EEAEFESSEIPASGISDDVSFVRAARRRAFWKTPVARWSLGVLALLLMTALAIQWLVQQKDNLAALDPRLGSLLQTVCGQ LRCEIRAPRHIDSLVIDSSSFNRIGPDAYRLSFVLKNTGTIPLEVPSLEVTLTDTQDRAVVRRVLTPAQFGATATTLGAR SELAGALSMKVAGDGVRSASPAPSSTSPASWRVAGYRVLAFYP >Mature_362_residues SLITRCPACGTMFKVVTDQLKVSQGWVRCGHCAEVFDASVHLLPGEAAGLPPSAFTPDQEPVFRVAASTLDTHEPAQASE STADPSWAPARAFADRVPLTPFLSGQDAQEHDSIADFDPASWKLALHERQQLDSEPAQANVEPEDTPPRRPDLVHTATAE EAEFESSEIPASGISDDVSFVRAARRRAFWKTPVARWSLGVLALLLMTALAIQWLVQQKDNLAALDPRLGSLLQTVCGQL RCEIRAPRHIDSLVIDSSSFNRIGPDAYRLSFVLKNTGTIPLEVPSLEVTLTDTQDRAVVRRVLTPAQFGATATTLGARS ELAGALSMKVAGDGVRSASPAPSSTSPASWRVAGYRVLAFYP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39147; Mature: 39016
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: PS00850 GLY_RADICAL_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLITRCPACGTMFKVVTDQLKVSQGWVRCGHCAEVFDASVHLLPGEAAGLPPSAFTPDQ CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEECCCCCCCCCCCCCCCC EPVFRVAASTLDTHEPAQASESTADPSWAPARAFADRVPLTPFLSGQDAQEHDSIADFDP CHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCC ASWKLALHERQQLDSEPAQANVEPEDTPPRRPDLVHTATAEEAEFESSEIPASGISDDVS CCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCCCCCHHHH FVRAARRRAFWKTPVARWSLGVLALLLMTALAIQWLVQQKDNLAALDPRLGSLLQTVCGQ HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH LRCEIRAPRHIDSLVIDSSSFNRIGPDAYRLSFVLKNTGTIPLEVPSLEVTLTDTQDRAV HEEECCCCCCHHHEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCEEEEEECCHHHHH VRRVLTPAQFGATATTLGARSELAGALSMKVAGDGVRSASPAPSSTSPASWRVAGYRVLA HHHHHCHHHHCCHHHHHCCHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEE FYP ECC >Mature Secondary Structure SLITRCPACGTMFKVVTDQLKVSQGWVRCGHCAEVFDASVHLLPGEAAGLPPSAFTPDQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEECCCCCCCCCCCCCCCC EPVFRVAASTLDTHEPAQASESTADPSWAPARAFADRVPLTPFLSGQDAQEHDSIADFDP CHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCC ASWKLALHERQQLDSEPAQANVEPEDTPPRRPDLVHTATAEEAEFESSEIPASGISDDVS CCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCCCCCHHHH FVRAARRRAFWKTPVARWSLGVLALLLMTALAIQWLVQQKDNLAALDPRLGSLLQTVCGQ HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH LRCEIRAPRHIDSLVIDSSSFNRIGPDAYRLSFVLKNTGTIPLEVPSLEVTLTDTQDRAV HEEECCCCCCHHHEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCEEEEEECCHHHHH VRRVLTPAQFGATATTLGARSELAGALSMKVAGDGVRSASPAPSSTSPASWRVAGYRVLA HHHHHCHHHHCCHHHHHCCHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEE FYP ECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA