| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ybbP [H]
Identifier: 91786846
GI number: 91786846
Start: 964482
End: 967043
Strand: Direct
Name: ybbP [H]
Synonym: Bpro_0944
Alternate gene names: 91786846
Gene position: 964482-967043 (Clockwise)
Preceding gene: 91786845
Following gene: 91786847
Centisome position: 18.55
GC content: 67.33
Gene sequence:
>2562_bases ATGCACTTTTTGTTTCTGAAGCTCGGCTGGAGATCGCTGCTGCGCGATTTGCGGGCCGGTGAGTTGCGCCTGCTGATTGT GGCGGTCACGCTGGCGGTGGCTGCGCTGACCGCGGTGGGGTTTTTTGCCGACCGGCTCAAGGGCGGATTGCAGCGTGACG CGGGACGATTGCTGGGCGGGGATGCGGTGGTCCGCAGTGACGGCGTGACTCCGGCCGCGTTCATCGCCAAGGCCCGGGCG CTGGGCCTGCAGTCCGTGTCCACCGTGACCTTTCCCACCATGGGCCGGACGCGCGATGAAGAGGGCGGGCAGGCCAAGCT GGTGGCGTTCAAGGGCGTGCCGGAGGGTTACCCCCTGCGCGGCGCGATGAAAGTGTCAGACAGCCTGGACGGTGCTGGCC AAGACACCCGCGACATCCCCGCGCCCGGCACCGCCTGGGCCGATGCCTCGCTGCTCGACGCCCTCGGCCTGCAACTGGGC CAGACCCTCCTGATGGGCGAGTCCAGCTTCAAGCTGACCCGCATCATCGTGCAGGAGCCCGACCGGGGTGCGGGCTTCAT CAGTTTTTCGCCGCGCGTCATGGTCAACCAGGCCGACGTGGCCGCCACGGGCCTGATCCAGCCCGCCAGCCGCACCAATT ACCGCTTCGCCGTTGCCGGGGACGACAAGGCCGTCAAGGCCTACGTCAAATGGGCAAGCGACGAGATCAAGAAGCCGGCG GAGCAGTCCGGCATTCGCGGCGTGCGCCTGGAGTCGCTGGAAAGCGGCAGCCCCGAGATGCGCCAGACGCTGGACCGTGC CGAGAAATTCCTGAATCTGGTCGCGCTGCTGGCGGCCTTGCTAAGCGCCGTGGCGGTGGCCATCGTGGCGCGCGGCTTTG CCGCCAAGCACCTGGACGACTGCGCCATGCTGCGGGTGCTGGGCCAGTCGCAGCGCACCATTGCGCTGGCCTACGGCTTT GAGTTTGCGCTGGCCGGCCTGGGCGCCAGTGCCTTGGGCGTGCTGGTGGGTTTTGCGGTGCATTACGGTTTTGTGGTGCT GCTGGCCGGCCTGGTGGAAACGGCATTGCCCGCGCCAACCTTCTGGCCTGTCGCTTTCGGCATGGGCATGGGTCTCACCT TGCTGCTGGCCTTTGGCCTGCCGCCGGTCCTGCAGCTGGCGCAGGTGCCGCCGCTGCGCGTGATTCGCCGCGATGTCGGC AACCTGAAACCGGCGTCCATGGCCGTGCTGGGTGTGGGCGTGACCGGTTTTGCTGCGCTGCTGCTGGCCGCCAGCAGTGA CCTCAAGCTGGGGCTGATCGCGGTTGGCGGCTTTCTGGGGGCTGTGCTGGTGTTTGCGCTGGCCAGCTATGCCGCCATCA AATTGCTGCGCGTCAGCGTGAATGAGGCCACCGCGCCGCGCTGGCTGATGCTGGCCACCCGGCAGCTGTCGGCGCGCCCG GTGTATGCGGTGGTGCAGACCAGCGCGCTGGCCGTGGGATTGCTGGCGCTGATGCTGCTGGTGCTGCTGCGCACTGACCT GATCAGCAGCTGGCGCAAGGCCACGCCGCCCGATGCGCCCAACCGCTTTGTGATCAATGTGCAACCCGAGCAGGGCGATG CCTTCCAGCAGGCCCTGCGCGATGGCGGTATCAAAAAGTTTGACTGGTACCCCATGATCCGTGGCCGCCTGGTGGCGGTG AATGGCAAGGCCGTGACACCCGATGACTTTGAGGACGACCGCGCCAGGCGCCTGGTCGACCGCGAGTTCAATTTGTCCAA CAGCGCCGTGATGCCAACGCACAACCAGCTGACAGGCGGGCGGTGGACGGCGGGTGAAAAAGACGCCATCAGCGTGGAGG AGGGCCTGGCCAAGACGCTGGGCCTGAAGCTCGGCGACGCCCTGCGCTTTGACATTGGCGGCCAGCTCAGCGAGGCGAAG ATCACCAGCCTGCGCAAGGTCGACTGGAGCTCGATGCGGGTCAACTTTTTCGTGATGTACCCGGTGGCGCAGTTGCCGGC CGATGTGCCGGTGTCCTTCATCAGCGCCTTCCGCGCGCCCGAGCCTGCCCTTGCGGTGAACGGCCAGCCCCGTCTCCAGA GCTTTGACAACACCCTCGTCAAGGCGTTTCCCAATATCACCAATGTCGACATGAGCAGCACGCTGGCCCAGGTGCAGCGC GTGCTCGACCAGGTGATACGCGCCGTGGAATTCCTGTTTGGCTTTACGCTGGCGGCCGGCGTGGTGGTGCTGTTTGCGGC CATCACGGCCACGCGTGAAGAGCGCGCCCGCGAGTTCGCCATCATGCGCGCGGTGGGCGCGCGCGCCTCGTTGCTGCGGC AGGTGCAGCGCGCCGAGCTGGCGGGCGTCGGCCTGCTCGCCGGCTTCCTGGCTTCGCTGGTCGCGCTGGCGGTGGGCTGG GGGCTGGCGCGCTTTGTGTTCGATTTCAGCTGGACCGGCTCCTGGACGGTGCCTGTCTTCGGCAGCCTGGCTGGCGCGGC CCTGGCGCTCGCGGCGGGGTGGTGGGGGCTGCGTTCGGTGCTGAACACCCCGGTGGTCGAAACCTTGCGCAAAGCCACCT GA
Upstream 100 bases:
>100_bases TTGCCGCAGGCCAATACGCCGGCCGGCGCCTCATCCCGGGCCGAGGCCGAGAAAGTCCGGCCTTGAACTGGGGACGCACG CTTTGAGGTAAGGTTGCCGC
Downstream 100 bases:
>100_bases CCGGCATGTGTCCTTGCATACCTTCCAGCCGACCCTCACCCCAACCCTCTCCCGGAGGGCGAGGGGGCAAGAAAGTTTTC ACTCCCTCTTCCTCTGGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 853; Mature: 853
Protein sequence:
>853_residues MHFLFLKLGWRSLLRDLRAGELRLLIVAVTLAVAALTAVGFFADRLKGGLQRDAGRLLGGDAVVRSDGVTPAAFIAKARA LGLQSVSTVTFPTMGRTRDEEGGQAKLVAFKGVPEGYPLRGAMKVSDSLDGAGQDTRDIPAPGTAWADASLLDALGLQLG QTLLMGESSFKLTRIIVQEPDRGAGFISFSPRVMVNQADVAATGLIQPASRTNYRFAVAGDDKAVKAYVKWASDEIKKPA EQSGIRGVRLESLESGSPEMRQTLDRAEKFLNLVALLAALLSAVAVAIVARGFAAKHLDDCAMLRVLGQSQRTIALAYGF EFALAGLGASALGVLVGFAVHYGFVVLLAGLVETALPAPTFWPVAFGMGMGLTLLLAFGLPPVLQLAQVPPLRVIRRDVG NLKPASMAVLGVGVTGFAALLLAASSDLKLGLIAVGGFLGAVLVFALASYAAIKLLRVSVNEATAPRWLMLATRQLSARP VYAVVQTSALAVGLLALMLLVLLRTDLISSWRKATPPDAPNRFVINVQPEQGDAFQQALRDGGIKKFDWYPMIRGRLVAV NGKAVTPDDFEDDRARRLVDREFNLSNSAVMPTHNQLTGGRWTAGEKDAISVEEGLAKTLGLKLGDALRFDIGGQLSEAK ITSLRKVDWSSMRVNFFVMYPVAQLPADVPVSFISAFRAPEPALAVNGQPRLQSFDNTLVKAFPNITNVDMSSTLAQVQR VLDQVIRAVEFLFGFTLAAGVVVLFAAITATREERAREFAIMRAVGARASLLRQVQRAELAGVGLLAGFLASLVALAVGW GLARFVFDFSWTGSWTVPVFGSLAGAALALAAGWWGLRSVLNTPVVETLRKAT
Sequences:
>Translated_853_residues MHFLFLKLGWRSLLRDLRAGELRLLIVAVTLAVAALTAVGFFADRLKGGLQRDAGRLLGGDAVVRSDGVTPAAFIAKARA LGLQSVSTVTFPTMGRTRDEEGGQAKLVAFKGVPEGYPLRGAMKVSDSLDGAGQDTRDIPAPGTAWADASLLDALGLQLG QTLLMGESSFKLTRIIVQEPDRGAGFISFSPRVMVNQADVAATGLIQPASRTNYRFAVAGDDKAVKAYVKWASDEIKKPA EQSGIRGVRLESLESGSPEMRQTLDRAEKFLNLVALLAALLSAVAVAIVARGFAAKHLDDCAMLRVLGQSQRTIALAYGF EFALAGLGASALGVLVGFAVHYGFVVLLAGLVETALPAPTFWPVAFGMGMGLTLLLAFGLPPVLQLAQVPPLRVIRRDVG NLKPASMAVLGVGVTGFAALLLAASSDLKLGLIAVGGFLGAVLVFALASYAAIKLLRVSVNEATAPRWLMLATRQLSARP VYAVVQTSALAVGLLALMLLVLLRTDLISSWRKATPPDAPNRFVINVQPEQGDAFQQALRDGGIKKFDWYPMIRGRLVAV NGKAVTPDDFEDDRARRLVDREFNLSNSAVMPTHNQLTGGRWTAGEKDAISVEEGLAKTLGLKLGDALRFDIGGQLSEAK ITSLRKVDWSSMRVNFFVMYPVAQLPADVPVSFISAFRAPEPALAVNGQPRLQSFDNTLVKAFPNITNVDMSSTLAQVQR VLDQVIRAVEFLFGFTLAAGVVVLFAAITATREERAREFAIMRAVGARASLLRQVQRAELAGVGLLAGFLASLVALAVGW GLARFVFDFSWTGSWTVPVFGSLAGAALALAAGWWGLRSVLNTPVVETLRKAT >Mature_853_residues MHFLFLKLGWRSLLRDLRAGELRLLIVAVTLAVAALTAVGFFADRLKGGLQRDAGRLLGGDAVVRSDGVTPAAFIAKARA LGLQSVSTVTFPTMGRTRDEEGGQAKLVAFKGVPEGYPLRGAMKVSDSLDGAGQDTRDIPAPGTAWADASLLDALGLQLG QTLLMGESSFKLTRIIVQEPDRGAGFISFSPRVMVNQADVAATGLIQPASRTNYRFAVAGDDKAVKAYVKWASDEIKKPA EQSGIRGVRLESLESGSPEMRQTLDRAEKFLNLVALLAALLSAVAVAIVARGFAAKHLDDCAMLRVLGQSQRTIALAYGF EFALAGLGASALGVLVGFAVHYGFVVLLAGLVETALPAPTFWPVAFGMGMGLTLLLAFGLPPVLQLAQVPPLRVIRRDVG NLKPASMAVLGVGVTGFAALLLAASSDLKLGLIAVGGFLGAVLVFALASYAAIKLLRVSVNEATAPRWLMLATRQLSARP VYAVVQTSALAVGLLALMLLVLLRTDLISSWRKATPPDAPNRFVINVQPEQGDAFQQALRDGGIKKFDWYPMIRGRLVAV NGKAVTPDDFEDDRARRLVDREFNLSNSAVMPTHNQLTGGRWTAGEKDAISVEEGLAKTLGLKLGDALRFDIGGQLSEAK ITSLRKVDWSSMRVNFFVMYPVAQLPADVPVSFISAFRAPEPALAVNGQPRLQSFDNTLVKAFPNITNVDMSSTLAQVQR VLDQVIRAVEFLFGFTLAAGVVVLFAAITATREERAREFAIMRAVGARASLLRQVQRAELAGVGLLAGFLASLVALAVGW GLARFVFDFSWTGSWTVPVFGSLAGAALALAAGWWGLRSVLNTPVVETLRKAT
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=839, Percent_Identity=31.4660309892729, Blast_Score=327, Evalue=2e-90,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 90896; Mature: 90896
Theoretical pI: Translated: 10.48; Mature: 10.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHFLFLKLGWRSLLRDLRAGELRLLIVAVTLAVAALTAVGFFADRLKGGLQRDAGRLLGG CEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCC DAVVRSDGVTPAAFIAKARALGLQSVSTVTFPTMGRTRDEEGGQAKLVAFKGVPEGYPLR CEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCC GAMKVSDSLDGAGQDTRDIPAPGTAWADASLLDALGLQLGQTLLMGESSFKLTRIIVQEP CEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHEECCCCCEEEEEEEECC DRGAGFISFSPRVMVNQADVAATGLIQPASRTNYRFAVAGDDKAVKAYVKWASDEIKKPA CCCCEEEEECCEEEEECCCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCH EQSGIRGVRLESLESGSPEMRQTLDRAEKFLNLVALLAALLSAVAVAIVARGFAAKHLDD HHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CAMLRVLGQSQRTIALAYGFEFALAGLGASALGVLVGFAVHYGFVVLLAGLVETALPAPT HHHHHHHCCCCCEEEEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC FWPVAFGMGMGLTLLLAFGLPPVLQLAQVPPLRVIRRDVGNLKPASMAVLGVGVTGFAAL HHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCCCCHHHEEEECCHHHHHHH LLAASSDLKLGLIAVGGFLGAVLVFALASYAAIKLLRVSVNEATAPRWLMLATRQLSARP HHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCC VYAVVQTSALAVGLLALMLLVLLRTDLISSWRKATPPDAPNRFVINVQPEQGDAFQQALR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHH DGGIKKFDWYPMIRGRLVAVNGKAVTPDDFEDDRARRLVDREFNLSNSAVMPTHNQLTGG HCCCCEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC RWTAGEKDAISVEEGLAKTLGLKLGDALRFDIGGQLSEAKITSLRKVDWSSMRVNFFVMY CCCCCCCCCCCHHHHHHHHHCCHHCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEEE PVAQLPADVPVSFISAFRAPEPALAVNGQPRLQSFDNTLVKAFPNITNVDMSSTLAQVQR CHHHCCCCCCHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH VLDQVIRAVEFLFGFTLAAGVVVLFAAITATREERAREFAIMRAVGARASLLRQVQRAEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGVGLLAGFLASLVALAVGWGLARFVFDFSWTGSWTVPVFGSLAGAALALAAGWWGLRSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LNTPVVETLRKAT HCCHHHHHHHHCC >Mature Secondary Structure MHFLFLKLGWRSLLRDLRAGELRLLIVAVTLAVAALTAVGFFADRLKGGLQRDAGRLLGG CEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCC DAVVRSDGVTPAAFIAKARALGLQSVSTVTFPTMGRTRDEEGGQAKLVAFKGVPEGYPLR CEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCC GAMKVSDSLDGAGQDTRDIPAPGTAWADASLLDALGLQLGQTLLMGESSFKLTRIIVQEP CEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHEECCCCCEEEEEEEECC DRGAGFISFSPRVMVNQADVAATGLIQPASRTNYRFAVAGDDKAVKAYVKWASDEIKKPA CCCCEEEEECCEEEEECCCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCH EQSGIRGVRLESLESGSPEMRQTLDRAEKFLNLVALLAALLSAVAVAIVARGFAAKHLDD HHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CAMLRVLGQSQRTIALAYGFEFALAGLGASALGVLVGFAVHYGFVVLLAGLVETALPAPT HHHHHHHCCCCCEEEEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC FWPVAFGMGMGLTLLLAFGLPPVLQLAQVPPLRVIRRDVGNLKPASMAVLGVGVTGFAAL HHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCCCCHHHEEEECCHHHHHHH LLAASSDLKLGLIAVGGFLGAVLVFALASYAAIKLLRVSVNEATAPRWLMLATRQLSARP HHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCC VYAVVQTSALAVGLLALMLLVLLRTDLISSWRKATPPDAPNRFVINVQPEQGDAFQQALR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHH DGGIKKFDWYPMIRGRLVAVNGKAVTPDDFEDDRARRLVDREFNLSNSAVMPTHNQLTGG HCCCCEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC RWTAGEKDAISVEEGLAKTLGLKLGDALRFDIGGQLSEAKITSLRKVDWSSMRVNFFVMY CCCCCCCCCCCHHHHHHHHHCCHHCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEEE PVAQLPADVPVSFISAFRAPEPALAVNGQPRLQSFDNTLVKAFPNITNVDMSSTLAQVQR CHHHCCCCCCHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH VLDQVIRAVEFLFGFTLAAGVVVLFAAITATREERAREFAIMRAVGARASLLRQVQRAEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGVGLLAGFLASLVALAVGWGLARFVFDFSWTGSWTVPVFGSLAGAALALAAGWWGLRSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LNTPVVETLRKAT HCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]