| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is fdoI [H]
Identifier: 91786842
GI number: 91786842
Start: 960217
End: 961422
Strand: Direct
Name: fdoI [H]
Synonym: Bpro_0940
Alternate gene names: 91786842
Gene position: 960217-961422 (Clockwise)
Preceding gene: 91786841
Following gene: 91786843
Centisome position: 18.46
GC content: 60.45
Gene sequence:
>1206_bases ATGAAACACGCGCGGTTAGCTATATTTTTGATGGCGGTTGGCTTTACAGGGCTGACTGGGGCGCAGACGCCTGCGACTCA GCCGGCACCATCAGCCCAGGCATCGGGCGTCGTCACGCCAGCGCCCGCAGCATCTGCTTCGCCTGCAGCGGCTGGCGGGA TTCAGAGCCAGAACATTTTTCAGGTCAAGCCTGACGCGAGTGCCGATCCCAAATATGCGGGGCAAACCAACGCCGAGCGC GCCAAGGTCCAGCCCGGCAACAATGCGCCCATGTGGCGCCAGGTCGGCCAGGGCACGACCGGCTACAGCAGTCTTCCCAA AAGTGAAGCGCCCGAAGCCGGCAACCTGATCCAGCCCTTTGTGCAGTACCCCGGCTCGCGCCTGACCAATGCGGGTGAGG CCTGGCGGCAGGTGCGCAACAACTGGCTGATTCCGTATGGTGGTGCGCTGCTGCTGATCGTGGCGCTGGCCATTGCGATT TTTTACTTCAGCAAGGGTTCCATCAAGACCCATGGCGCCGACACGGGCCGCAAGATCGAGCGATTCACGCCGTTTGAACG CGCCGCGCACTGGTCCAACGCCACGGCATTTGTCATTCTGGCCGTGTCCGGTCTGGTGATGGCTTTCGGTAAATTTTTTC TGCTGCCGGTCATGGGGCTCACCCTGTTCGGCTGGCTGACCTACGCACTCAAGAATTTGCACAACTTTGCGGGTCCCCTG TTTGCCGTGTCGCTGCTCATTGTGTTTGTGACCTTTCTGCGCGATAACTGGCCGCAAAAAGGCGATCTGAACTGGCTGCT CAAGGGGGGAGGCCTGATCTCCGGCGCGGAACCGGCGTCCAGCCGGTTCAATGCCGGTGAAAAAGTGATTTTCTGGGGTG GTGTGTTTTTCCTCGGCGTGGTGGTGGTGTCATCGGGCTTTGTGCTCGACAAGCTGCTGCCAGGCCTGGTCTATGAGCGC GCGACCATGCAGATTGCGCACATGGTGCATGCGGTGGCCACCGTGCTCATGATGTGCCTGTTTCTGGGCCACATCTATAT AGGCACCCTTGGCATGCAGGGCGCCTTCAAGGCCATGGGCACCGGCTATGTGGATGAGACCTGGGCGAAGGAGCATCACG AGTACTGGTATGACGACGTGAAGGCGGGCAAGATCCCCCGCCAGCGTAGTGAGCCTGCGCCACCTGGCCAGACAGTACAG GTTTAA
Upstream 100 bases:
>100_bases GCTGGAAGCAGGGTGACAAGACGAGCTGGGAGCAGGGGCTCAAGGCCCGTGTACAGAACACCCAGAACGAATATTCCAGG GTGAAGTGACCGGGGGCCTT
Downstream 100 bases:
>100_bases AGCAGCGAGGACAGCGAGGACGCCATGAAAAAACTGATTCGACTTTTGACCTGGGGCCTGCTGGCAGGTGTGCCTGCGCT CGCGCTGGCCAAGCTGCCGC
Product: formate dehydrogenase subunit gamma
Products: CO2; NADH
Alternate protein names: Aerobic formate dehydrogenase cytochrome b556 subunit; FDH-Z subunit gamma; Formate dehydrogenase-O subunit gamma [H]
Number of amino acids: Translated: 401; Mature: 401
Protein sequence:
>401_residues MKHARLAIFLMAVGFTGLTGAQTPATQPAPSAQASGVVTPAPAASASPAAAGGIQSQNIFQVKPDASADPKYAGQTNAER AKVQPGNNAPMWRQVGQGTTGYSSLPKSEAPEAGNLIQPFVQYPGSRLTNAGEAWRQVRNNWLIPYGGALLLIVALAIAI FYFSKGSIKTHGADTGRKIERFTPFERAAHWSNATAFVILAVSGLVMAFGKFFLLPVMGLTLFGWLTYALKNLHNFAGPL FAVSLLIVFVTFLRDNWPQKGDLNWLLKGGGLISGAEPASSRFNAGEKVIFWGGVFFLGVVVVSSGFVLDKLLPGLVYER ATMQIAHMVHAVATVLMMCLFLGHIYIGTLGMQGAFKAMGTGYVDETWAKEHHEYWYDDVKAGKIPRQRSEPAPPGQTVQ V
Sequences:
>Translated_401_residues MKHARLAIFLMAVGFTGLTGAQTPATQPAPSAQASGVVTPAPAASASPAAAGGIQSQNIFQVKPDASADPKYAGQTNAER AKVQPGNNAPMWRQVGQGTTGYSSLPKSEAPEAGNLIQPFVQYPGSRLTNAGEAWRQVRNNWLIPYGGALLLIVALAIAI FYFSKGSIKTHGADTGRKIERFTPFERAAHWSNATAFVILAVSGLVMAFGKFFLLPVMGLTLFGWLTYALKNLHNFAGPL FAVSLLIVFVTFLRDNWPQKGDLNWLLKGGGLISGAEPASSRFNAGEKVIFWGGVFFLGVVVVSSGFVLDKLLPGLVYER ATMQIAHMVHAVATVLMMCLFLGHIYIGTLGMQGAFKAMGTGYVDETWAKEHHEYWYDDVKAGKIPRQRSEPAPPGQTVQ V >Mature_401_residues MKHARLAIFLMAVGFTGLTGAQTPATQPAPSAQASGVVTPAPAASASPAAAGGIQSQNIFQVKPDASADPKYAGQTNAER AKVQPGNNAPMWRQVGQGTTGYSSLPKSEAPEAGNLIQPFVQYPGSRLTNAGEAWRQVRNNWLIPYGGALLLIVALAIAI FYFSKGSIKTHGADTGRKIERFTPFERAAHWSNATAFVILAVSGLVMAFGKFFLLPVMGLTLFGWLTYALKNLHNFAGPL FAVSLLIVFVTFLRDNWPQKGDLNWLLKGGGLISGAEPASSRFNAGEKVIFWGGVFFLGVVVVSSGFVLDKLLPGLVYER ATMQIAHMVHAVATVLMMCLFLGHIYIGTLGMQGAFKAMGTGYVDETWAKEHHEYWYDDVKAGKIPRQRSEPAPPGQTVQ V
Specific function: Allows to use formate as major electron donor during aerobic respiration. Subunit gamma is probably the cytochrome b556(FDO) component of the formate dehydrogenase [H]
COG id: COG2864
COG function: function code C; Cytochrome b subunit of formate dehydrogenase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the formate dehydrogenase gamma subunit family [H]
Homologues:
Organism=Escherichia coli, GI1790325, Length=215, Percent_Identity=30.2325581395349, Blast_Score=101, Evalue=1e-22, Organism=Escherichia coli, GI1787750, Length=227, Percent_Identity=26.8722466960352, Blast_Score=87, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005797 - InterPro: IPR016174 - InterPro: IPR006471 [H]
Pfam domain/function: PF00033 Cytochrom_B_N [H]
EC number: 1.2.1.2
Molecular weight: Translated: 43084; Mature: 43084
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHARLAIFLMAVGFTGLTGAQTPATQPAPSAQASGVVTPAPAASASPAAAGGIQSQNIF CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEE QVKPDASADPKYAGQTNAERAKVQPGNNAPMWRQVGQGTTGYSSLPKSEAPEAGNLIQPF EECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH VQYPGSRLTNAGEAWRQVRNNWLIPYGGALLLIVALAIAIFYFSKGSIKTHGADTGRKIE HHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHH RFTPFERAAHWSNATAFVILAVSGLVMAFGKFFLLPVMGLTLFGWLTYALKNLHNFAGPL HCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FAVSLLIVFVTFLRDNWPQKGDLNWLLKGGGLISGAEPASSRFNAGEKVIFWGGVFFLGV HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHCCCCCEEEEEHHHHHHHH VVVSSGFVLDKLLPGLVYERATMQIAHMVHAVATVLMMCLFLGHIYIGTLGMQGAFKAMG HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC TGYVDETWAKEHHEYWYDDVKAGKIPRQRSEPAPPGQTVQV CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKHARLAIFLMAVGFTGLTGAQTPATQPAPSAQASGVVTPAPAASASPAAAGGIQSQNIF CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEE QVKPDASADPKYAGQTNAERAKVQPGNNAPMWRQVGQGTTGYSSLPKSEAPEAGNLIQPF EECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH VQYPGSRLTNAGEAWRQVRNNWLIPYGGALLLIVALAIAIFYFSKGSIKTHGADTGRKIE HHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHH RFTPFERAAHWSNATAFVILAVSGLVMAFGKFFLLPVMGLTLFGWLTYALKNLHNFAGPL HCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FAVSLLIVFVTFLRDNWPQKGDLNWLLKGGGLISGAEPASSRFNAGEKVIFWGGVFFLGV HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHCCCCCEEEEEHHHHHHHH VVVSSGFVLDKLLPGLVYERATMQIAHMVHAVATVLMMCLFLGHIYIGTLGMQGAFKAMG HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC TGYVDETWAKEHHEYWYDDVKAGKIPRQRSEPAPPGQTVQV CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: formate; NAD+
Specific reaction: formate + NAD+ = CO2 + NADH
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]