Definition | Escherichia coli UTI89 chromosome, complete genome. |
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Accession | NC_007946 |
Length | 5,065,741 |
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The map label for this gene is ygdR
Identifier: 91212231
GI number: 91212231
Start: 3161708
End: 3161926
Strand: Direct
Name: ygdR
Synonym: UTI89_C3237
Alternate gene names: 91212231
Gene position: 3161708-3161926 (Clockwise)
Preceding gene: 91212229
Following gene: 91212232
Centisome position: 62.41
GC content: 43.38
Gene sequence:
>219_bases ATGAAAAAATGGGCAGTAATAATTTCTGCAGTCGGACTGGCGTTTGCTGTTTCCGGGTGTTCCAGTGATTACGTCATGGC GACCAAAGATGGCCGTATGATTTTGACCGATGGAAAACCTGAAATTGATGATGATACCGGGCTGGTGAGTTATCACGATC AGCAAGGTAACGCGATGCAAATTAACCGTGATGATGTTTCGCAAATTATTGAACGTTAA
Upstream 100 bases:
>100_bases CCTGTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACTATTATCATAGGTG GGCCAAATGAGGATAACCGG
Downstream 100 bases:
>100_bases CAAATAAGGTCAGCATCCGGCTGGCCTTAAGATTTTTCTCTTTCCCTTTTCCCTTCCCTCTGCCATTTTTATATTCCTTA TGTCGTGATTATAAAAAGGA
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 72; Mature: 72
Protein sequence:
>72_residues MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER
Sequences:
>Translated_72_residues MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER >Mature_72_residues MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli ygdI
Homologues:
Organism=Escherichia coli, GI1789198, Length=72, Percent_Identity=100, Blast_Score=149, Evalue=5e-38, Organism=Escherichia coli, GI87082162, Length=72, Percent_Identity=59.7222222222222, Blast_Score=91, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): YGDR_ECO57 (P65296)
Other databases:
- EMBL: AE005174 - EMBL: BA000007 - PIR: B91090 - PIR: E85935 - RefSeq: NP_289386.1 - RefSeq: NP_311717.1 - ProteinModelPortal: P65296 - SMR: P65296 - EnsemblBacteria: EBESCT00000024678 - EnsemblBacteria: EBESCT00000056484 - GeneID: 916497 - GeneID: 958295 - GenomeReviews: AE005174_GR - GenomeReviews: BA000007_GR - KEGG: ece:Z4151 - KEGG: ecs:ECs3690 - GeneTree: EBGT00050000010076 - HOGENOM: HBG671268 - OMA: SSQYIMS - BioCyc: ECOL83334:ECS3690-MONOMER - InterPro: IPR010305
Pfam domain/function: PF06004 DUF903
EC number: NA
Molecular weight: Translated: 7877; Mature: 7877
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 5.6 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQ CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCEEE INRDDVSQIIER ECHHHHHHHHCC >Mature Secondary Structure MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQ CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCEEE INRDDVSQIIER ECHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796