Click here to switch to the map view.

The map label for this gene is 89885884

Identifier: 89885884

GI number: 89885884

Start: 162641

End: 163576

Strand: Reverse

Name: 89885884

Synonym: Rfer_4398

Alternate gene names: NA

Gene position: 163576-162641 (Counterclockwise)

Preceding gene: 89885885

Following gene: 89885883

Centisome position: 63.54

GC content: 54.91

Gene sequence:

>936_bases
ATGAAGTCAATAATGAACCTGATCAATTCCAATTCGGGCGCCACAGGGCCGGTCGGCTCAATGCAAACCGAATTGTCACC
AATAGCGCAAGAGGCAATTTACTCGTCGATGGTGGCGGGAAGCTTTCCGAAAACGACCGGCAGTTCACAACAGTCTGCCT
ATTGGCTTGCGCGGGAGGCGCTGGACGATGACAGGTTGGCGCTGGTATCGGGCAGCAGTGAGACCCATGTGTTTTACCTG
GCGGTGCCAACCAGGGCGTTCTCCAACGGCGCCTTGCGGGATTTGCCCCTGTCAGCTGCCTTCCCAAATCATCCTGAGCA
TGAAGGCGACGGGGCGTATGTCCTGCACCTCGGGCACGATGTGACAGTGGCCGTCATCATTAACGGCTCGGACTTCAAAA
TCCTTTGCAATGAGCAGCTAGCCGTTCTTGAAATCATAGAAGATGAAGGCCTTAGGCAGATTGAGTGCGACGCAAAACTG
GCTTGGCCTCTCAAATCACTGCGGCTGTCGTCCGAACAGGCTGCAGATTTGGCCACAAAGTGGGCGGGCAAAGTATCCGC
GGTTGTGCTGGCGATGTCGGTGCTGGTCTACGCCGCGGCTTCAATCGCCTCAGGCGTAATTCAAGGCCGCTCCAAGGACG
CCATCAGCGTGCGGGAACACGGGTTGGCCTCCATCATTGGACAGGTGGCTTTGTCATCGCCGCTGGCCGAACGCATGGCC
AAATTTCAGCAAATCTCGTCCGTGGTAGTTCGTGCCGGTGGTTGGCTCAAAGCTTACAACTTCAAAAATGGAAAGGAAAG
TTTTGTCGTGGAACTCCCCGAATGGGTATCACGCGACTATCTGGATGCGCTCGGACCCGATGTCAAAACAGACTTGGATC
GGGTTGGCGGCGTATTGGTGGTAACCAAAGGGGCAATGAAGCTTGAAAACAAATAA

Upstream 100 bases:

>100_bases
CGGGCTACTTTACTCAGGCTGTGGCGTGTTGATCGCCTTGTGGGTGTCCTACATCCAGTACCAGGCAGTGATGGCCAGCA
CAACGTCAATCGGGGGATAA

Downstream 100 bases:

>100_bases
TGTGACGCCTGATTTTCTGACGCGAGTAGCGTTGGTCTGGTTTACTCGGTCCCCGTGGGCGGTCGTTTGCGCCATGGCGC
TTGCTCTCGCGGCGACGTGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKSIMNLINSNSGATGPVGSMQTELSPIAQEAIYSSMVAGSFPKTTGSSQQSAYWLAREALDDDRLALVSGSSETHVFYL
AVPTRAFSNGALRDLPLSAAFPNHPEHEGDGAYVLHLGHDVTVAVIINGSDFKILCNEQLAVLEIIEDEGLRQIECDAKL
AWPLKSLRLSSEQAADLATKWAGKVSAVVLAMSVLVYAAASIASGVIQGRSKDAISVREHGLASIIGQVALSSPLAERMA
KFQQISSVVVRAGGWLKAYNFKNGKESFVVELPEWVSRDYLDALGPDVKTDLDRVGGVLVVTKGAMKLENK

Sequences:

>Translated_311_residues
MKSIMNLINSNSGATGPVGSMQTELSPIAQEAIYSSMVAGSFPKTTGSSQQSAYWLAREALDDDRLALVSGSSETHVFYL
AVPTRAFSNGALRDLPLSAAFPNHPEHEGDGAYVLHLGHDVTVAVIINGSDFKILCNEQLAVLEIIEDEGLRQIECDAKL
AWPLKSLRLSSEQAADLATKWAGKVSAVVLAMSVLVYAAASIASGVIQGRSKDAISVREHGLASIIGQVALSSPLAERMA
KFQQISSVVVRAGGWLKAYNFKNGKESFVVELPEWVSRDYLDALGPDVKTDLDRVGGVLVVTKGAMKLENK
>Mature_311_residues
MKSIMNLINSNSGATGPVGSMQTELSPIAQEAIYSSMVAGSFPKTTGSSQQSAYWLAREALDDDRLALVSGSSETHVFYL
AVPTRAFSNGALRDLPLSAAFPNHPEHEGDGAYVLHLGHDVTVAVIINGSDFKILCNEQLAVLEIIEDEGLRQIECDAKL
AWPLKSLRLSSEQAADLATKWAGKVSAVVLAMSVLVYAAASIASGVIQGRSKDAISVREHGLASIIGQVALSSPLAERMA
KFQQISSVVVRAGGWLKAYNFKNGKESFVVELPEWVSRDYLDALGPDVKTDLDRVGGVLVVTKGAMKLENK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33229; Mature: 33229

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIMNLINSNSGATGPVGSMQTELSPIAQEAIYSSMVAGSFPKTTGSSQQSAYWLAREA
CHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
LDDDRLALVSGSSETHVFYLAVPTRAFSNGALRDLPLSAAFPNHPEHEGDGAYVLHLGHD
CCCCCEEEEECCCCCEEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
VTVAVIINGSDFKILCNEQLAVLEIIEDEGLRQIECDAKLAWPLKSLRLSSEQAADLATK
EEEEEEEECCCEEEEECCCEEEEEEHHCCCCEEEECCCEEECCHHHHHCCCHHHHHHHHH
WAGKVSAVVLAMSVLVYAAASIASGVIQGRSKDAISVREHGLASIIGQVALSSPLAERMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
KFQQISSVVVRAGGWLKAYNFKNGKESFVVELPEWVSRDYLDALGPDVKTDLDRVGGVLV
HHHHHHHHHHHCCCEEEEECCCCCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHCCCEEE
VTKGAMKLENK
EECCCEECCCC
>Mature Secondary Structure
MKSIMNLINSNSGATGPVGSMQTELSPIAQEAIYSSMVAGSFPKTTGSSQQSAYWLAREA
CHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
LDDDRLALVSGSSETHVFYLAVPTRAFSNGALRDLPLSAAFPNHPEHEGDGAYVLHLGHD
CCCCCEEEEECCCCCEEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
VTVAVIINGSDFKILCNEQLAVLEIIEDEGLRQIECDAKLAWPLKSLRLSSEQAADLATK
EEEEEEEECCCEEEEECCCEEEEEEHHCCCCEEEECCCEEECCHHHHHCCCHHHHHHHHH
WAGKVSAVVLAMSVLVYAAASIASGVIQGRSKDAISVREHGLASIIGQVALSSPLAERMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
KFQQISSVVVRAGGWLKAYNFKNGKESFVVELPEWVSRDYLDALGPDVKTDLDRVGGVLV
HHHHHHHHHHHCCCEEEEECCCCCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHCCCEEE
VTKGAMKLENK
EECCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA