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The map label for this gene is 89885754

Identifier: 89885754

GI number: 89885754

Start: 23093

End: 25021

Strand: Reverse

Name: 89885754

Synonym: Rfer_4267

Alternate gene names: NA

Gene position: 25021-23093 (Counterclockwise)

Preceding gene: 89885755

Following gene: 89885753

Centisome position: 9.72

GC content: 56.45

Gene sequence:

>1929_bases
ATGCGCTTTTCGGATGTTTTCTCGTTCATAAAAAGAACCCCTCGTAAGGTTATTCCTGTTCCCTCGTCTGTCCGAGTAAC
CGGCATCATCCCGACGGCCATGGTTCAGGTGGTTGCCCCCGAGTCGTCCAACGAACCAGGTGTCCCCCGTTATCCCCCAA
TGGACTCGGGAATCCGTTTGGCAACTCCAGACGATGTCCTGGCCACCCAAGCAGACCTGATCCGCCTCCTGAAACGCAAT
CTTGGTATTGCCAATGATGATTTCGAGCGTCGATATCTGGCCCCCCTGCGCCGGGCCGCCGAGCTGATTAACCTCATTCC
TGCCACGCGTGACAAGCATCACACGGGGGCGGGGGGACTGTTCCGCTTCGCAGCGACTATGGCCATTCGTTCGGCCCAGT
CCGCCGATGGACGTATCTTTGCTGCAAACGAGGGAATTGAGCGTCGCCGACAAACTGAAGCGGCGTGGCGACATGCTGCC
TTTTTGACCGGTTTGACCTGTGAACTCTTTCGACCGCTCACCGAAATGATGATTTTTGATCCAAAGGGCAATCAGTGGTC
GCCATTTGTTGCTCCGCTGACCGAATGGGCGCGTCAACAAGGTGCAGATCGATTCTTCGTCAGGTGGCACCAGCATGATG
ATGCGCGCAGTGTGGCCAACACGCTTTCCTCCTGGGCGGTTAACGCGGTCGTTGGCAATGAAGTTCTGTCTGAACTAAAC
AACGTCAACTCCAAGATTGTCGAAACCATTTTCGGGGTGTCCTCCGGCTCCATCACGACTGCTGACAATTCGACGATGGC
GGCGCTTATCAATGATGTGCGTCGCCGCGTTATCACTCAAGACCATGAGATCGCGCCGGCGACATATGGAAAGTTGACCT
CGGGCTCGCAACTTGAGCCATATTTCATGGACGCGATGCGCACACTGCTGCGCACGGGCGTCTGGCAGGTCAATACCAAG
TCGGGACGTTGCCACTTCGGCGCCGATGGTTTCTACGTCGCGTGGCGTATGGGGTCCCAAGAGATCCTTGGCCACCTCCA
AACCGAAAAGATTGCCGGTGTACCGACTGCGAAGGAAACGCTGGCGGAAATGATGGGACGTGCTGGAATTATTAGCATTG
CCCCGGATGGTTCGTGGATTCATCTCGTACGTTCCAGTGTTGGTGCAAGTGCGCCCATGCCCGCTGTGCGAATTCAGTCG
CCGCTGGCCATTCTGGGTCACCTCGAAGTCAAACCTGTCGCTGACACGTTGCGCGTCAACTCGGCCAAACCGGCTCCTTC
CGTAGCAATCCCACTCACAAAGCCCGACGTTGTGAGCGTTGCCCCAGCGCTTGCCAAAGAGGTCCAAGAAATTGCCATCC
TCGCACCCAAGAGTGACTTGAAAGCAAAGGTTCTGGAGTCGGTCGATCAAGAGACTGGCGAAATAGCGCCCGTTGTTGCA
TCTAAACCCGCCGCACCTGAGCCGCCAAAAACATCGGCTGCCGCGCCTGCACCCGCCTCGGATGTAGTGCAACAGGTAAA
GCCCGCCGTCGCTGCAAAGAGAGCGCCCTCAGCCAAGCCGGGCATTCCGACAGTGCCCGATGTTGATGACCTGGTGCAGG
AAACCTTTGACACGGACATGTTGCTTGAGCTGGGAGCGCCAATCTGTCGGGAAGTCGCGGCTTGGCGTGATTTGTGGAAT
CGTGGCCAGTCATCGCAAGAGTTCCTGCGCACCACTGAGGGTCTGGCGGTGTCTTATGCCGTGGTCAACGGATCAGCCAT
TCAGTTGTCAAAGATTATGGAAGCGCTCAAGGGCGCCGGCTACATCGAAATCTCCAACCTCAATGGGACGCAGCGGACCC
TGACGCCGATTCCGTTCCCAAAAAAGACAGAACTCGGCCTTGTGCTGCGTACTAATTTTGCCCGTAAAGCCGGTTTCATT
CTCGAATAA

Upstream 100 bases:

>100_bases
CCCCGGCCCAGCGCCGCCTAAACACTTTATTTTGGTTTTCGAGAACGTTTTCATAGGGTTTTCTGCCAATAGTGAATAAA
AGTTTCTTCAAAATGAAGAC

Downstream 100 bases:

>100_bases
GGAATGCCATGCCTGTTGTAGCCACCGAAGTAGAGAATCTATACCGCCCCGCCCACGAGCTCAATGCCTCGGCAGTGTGG
ACGTTTTCCGCCGTTGCTTC

Product: relaxase

Products: NA

Alternate protein names: DNA Helicase; Plasmid Conjugative Relaxase; Truncated TraI; FHA Domain-Containing Protein; Nickase; Type IV Conjugative Transfer System Protein TraI; Type IV Secretion-Like Conjugative Relaxase TraI

Number of amino acids: Translated: 642; Mature: 642

Protein sequence:

>642_residues
MRFSDVFSFIKRTPRKVIPVPSSVRVTGIIPTAMVQVVAPESSNEPGVPRYPPMDSGIRLATPDDVLATQADLIRLLKRN
LGIANDDFERRYLAPLRRAAELINLIPATRDKHHTGAGGLFRFAATMAIRSAQSADGRIFAANEGIERRRQTEAAWRHAA
FLTGLTCELFRPLTEMMIFDPKGNQWSPFVAPLTEWARQQGADRFFVRWHQHDDARSVANTLSSWAVNAVVGNEVLSELN
NVNSKIVETIFGVSSGSITTADNSTMAALINDVRRRVITQDHEIAPATYGKLTSGSQLEPYFMDAMRTLLRTGVWQVNTK
SGRCHFGADGFYVAWRMGSQEILGHLQTEKIAGVPTAKETLAEMMGRAGIISIAPDGSWIHLVRSSVGASAPMPAVRIQS
PLAILGHLEVKPVADTLRVNSAKPAPSVAIPLTKPDVVSVAPALAKEVQEIAILAPKSDLKAKVLESVDQETGEIAPVVA
SKPAAPEPPKTSAAAPAPASDVVQQVKPAVAAKRAPSAKPGIPTVPDVDDLVQETFDTDMLLELGAPICREVAAWRDLWN
RGQSSQEFLRTTEGLAVSYAVVNGSAIQLSKIMEALKGAGYIEISNLNGTQRTLTPIPFPKKTELGLVLRTNFARKAGFI
LE

Sequences:

>Translated_642_residues
MRFSDVFSFIKRTPRKVIPVPSSVRVTGIIPTAMVQVVAPESSNEPGVPRYPPMDSGIRLATPDDVLATQADLIRLLKRN
LGIANDDFERRYLAPLRRAAELINLIPATRDKHHTGAGGLFRFAATMAIRSAQSADGRIFAANEGIERRRQTEAAWRHAA
FLTGLTCELFRPLTEMMIFDPKGNQWSPFVAPLTEWARQQGADRFFVRWHQHDDARSVANTLSSWAVNAVVGNEVLSELN
NVNSKIVETIFGVSSGSITTADNSTMAALINDVRRRVITQDHEIAPATYGKLTSGSQLEPYFMDAMRTLLRTGVWQVNTK
SGRCHFGADGFYVAWRMGSQEILGHLQTEKIAGVPTAKETLAEMMGRAGIISIAPDGSWIHLVRSSVGASAPMPAVRIQS
PLAILGHLEVKPVADTLRVNSAKPAPSVAIPLTKPDVVSVAPALAKEVQEIAILAPKSDLKAKVLESVDQETGEIAPVVA
SKPAAPEPPKTSAAAPAPASDVVQQVKPAVAAKRAPSAKPGIPTVPDVDDLVQETFDTDMLLELGAPICREVAAWRDLWN
RGQSSQEFLRTTEGLAVSYAVVNGSAIQLSKIMEALKGAGYIEISNLNGTQRTLTPIPFPKKTELGLVLRTNFARKAGFI
LE
>Mature_642_residues
MRFSDVFSFIKRTPRKVIPVPSSVRVTGIIPTAMVQVVAPESSNEPGVPRYPPMDSGIRLATPDDVLATQADLIRLLKRN
LGIANDDFERRYLAPLRRAAELINLIPATRDKHHTGAGGLFRFAATMAIRSAQSADGRIFAANEGIERRRQTEAAWRHAA
FLTGLTCELFRPLTEMMIFDPKGNQWSPFVAPLTEWARQQGADRFFVRWHQHDDARSVANTLSSWAVNAVVGNEVLSELN
NVNSKIVETIFGVSSGSITTADNSTMAALINDVRRRVITQDHEIAPATYGKLTSGSQLEPYFMDAMRTLLRTGVWQVNTK
SGRCHFGADGFYVAWRMGSQEILGHLQTEKIAGVPTAKETLAEMMGRAGIISIAPDGSWIHLVRSSVGASAPMPAVRIQS
PLAILGHLEVKPVADTLRVNSAKPAPSVAIPLTKPDVVSVAPALAKEVQEIAILAPKSDLKAKVLESVDQETGEIAPVVA
SKPAAPEPPKTSAAAPAPASDVVQQVKPAVAAKRAPSAKPGIPTVPDVDDLVQETFDTDMLLELGAPICREVAAWRDLWN
RGQSSQEFLRTTEGLAVSYAVVNGSAIQLSKIMEALKGAGYIEISNLNGTQRTLTPIPFPKKTELGLVLRTNFARKAGFI
LE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69522; Mature: 69522

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSDVFSFIKRTPRKVIPVPSSVRVTGIIPTAMVQVVAPESSNEPGVPRYPPMDSGIRL
CCHHHHHHHHHHCCCEEECCCCCCEEEEECHHHHHEEECCCCCCCCCCCCCCCCCCCEEE
ATPDDVLATQADLIRLLKRNLGIANDDFERRYLAPLRRAAELINLIPATRDKHHTGAGGL
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
FRFAATMAIRSAQSADGRIFAANEGIERRRQTEAAWRHAAFLTGLTCELFRPLTEMMIFD
HHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEC
PKGNQWSPFVAPLTEWARQQGADRFFVRWHQHDDARSVANTLSSWAVNAVVGNEVLSELN
CCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVNSKIVETIFGVSSGSITTADNSTMAALINDVRRRVITQDHEIAPATYGKLTSGSQLEP
HHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
YFMDAMRTLLRTGVWQVNTKSGRCHFGADGFYVAWRMGSQEILGHLQTEKIAGVPTAKET
HHHHHHHHHHHCCCEEEECCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHH
LAEMMGRAGIISIAPDGSWIHLVRSSVGASAPMPAVRIQSPLAILGHLEVKPVADTLRVN
HHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCCCHHHHCCCHHHHHCCCCEECHHHHCCC
SAKPAPSVAIPLTKPDVVSVAPALAKEVQEIAILAPKSDLKAKVLESVDQETGEIAPVVA
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCCCCEEC
SKPAAPEPPKTSAAAPAPASDVVQQVKPAVAAKRAPSAKPGIPTVPDVDDLVQETFDTDM
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHH
LLELGAPICREVAAWRDLWNRGQSSQEFLRTTEGLAVSYAVVNGSAIQLSKIMEALKGAG
HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCC
YIEISNLNGTQRTLTPIPFPKKTELGLVLRTNFARKAGFILE
EEEEECCCCCCCCCCCCCCCCCCCCCEEEECCHHHHCCCCCC
>Mature Secondary Structure
MRFSDVFSFIKRTPRKVIPVPSSVRVTGIIPTAMVQVVAPESSNEPGVPRYPPMDSGIRL
CCHHHHHHHHHHCCCEEECCCCCCEEEEECHHHHHEEECCCCCCCCCCCCCCCCCCCEEE
ATPDDVLATQADLIRLLKRNLGIANDDFERRYLAPLRRAAELINLIPATRDKHHTGAGGL
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
FRFAATMAIRSAQSADGRIFAANEGIERRRQTEAAWRHAAFLTGLTCELFRPLTEMMIFD
HHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEC
PKGNQWSPFVAPLTEWARQQGADRFFVRWHQHDDARSVANTLSSWAVNAVVGNEVLSELN
CCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVNSKIVETIFGVSSGSITTADNSTMAALINDVRRRVITQDHEIAPATYGKLTSGSQLEP
HHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
YFMDAMRTLLRTGVWQVNTKSGRCHFGADGFYVAWRMGSQEILGHLQTEKIAGVPTAKET
HHHHHHHHHHHCCCEEEECCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHH
LAEMMGRAGIISIAPDGSWIHLVRSSVGASAPMPAVRIQSPLAILGHLEVKPVADTLRVN
HHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCCCHHHHCCCHHHHHCCCCEECHHHHCCC
SAKPAPSVAIPLTKPDVVSVAPALAKEVQEIAILAPKSDLKAKVLESVDQETGEIAPVVA
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCCCCEEC
SKPAAPEPPKTSAAAPAPASDVVQQVKPAVAAKRAPSAKPGIPTVPDVDDLVQETFDTDM
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHH
LLELGAPICREVAAWRDLWNRGQSSQEFLRTTEGLAVSYAVVNGSAIQLSKIMEALKGAG
HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCC
YIEISNLNGTQRTLTPIPFPKKTELGLVLRTNFARKAGFILE
EEEEECCCCCCCCCCCCCCCCCCCCCEEEECCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA