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The map label for this gene is trbE [H]

Identifier: 89885747

GI number: 89885747

Start: 15694

End: 18189

Strand: Reverse

Name: trbE [H]

Synonym: Rfer_4260

Alternate gene names: 89885747

Gene position: 18189-15694 (Counterclockwise)

Preceding gene: 89885748

Following gene: 89885746

Centisome position: 7.07

GC content: 51.04

Gene sequence:

>2496_bases
ATGCTGAACATCGCTGATCTTGTTGCTGGTTATAACCGCTCAGCCCGTGGCTTTCAGGAACTTCTTCCCTACATGTGTCT
TTGGGACGAACAAACCGTAGCCACACTTGATCAGGGTATGTTGGCTCTGTATGAGTATGATGGTCTGGATGCAGAGGGGC
GCTCCGAAGCCGAGACCAGTCTTGCGGTAAACGCTTTTGAACAGGCATTCTCTGGTTTCGGATCTGGCTCAACGGTATGG
TCCTATGTCGACCGGCGTAAGACAGACGCATACCCACGGGGACATTTTTCCGACAATGTTGCCCGATTTATAGATCAAAC
GTGGCAGGACAAAGTCACATCCACTCAATACGAGAATAAATATTCTTTAGCTGTACATCAGCGTGCCAATGTCGGGACCA
TGGCACTGTTCGACACGGTTGACCTTTTGGTCAAGGAAGAGGGCCTTGGGTTGACTGCTGCTTTTGGAAAAGCCATCAAA
ACGCAATTATCGCTAAAAGCGCGACGGTCCGTCGACGAGCGCAAGATGCAAGCGGCAAAGACGGCGCTTGAGGACAAATT
GCTCTCCCTTGAGAGCGGTATGAGAAATTTGGGTTTGCGGCGTCTCGGCGAGGAGCGTCTGATGGCGGAACTCTACAACC
GGGTGTCGCCAGCCTCACCATCAAGAACCGCATACCCGGTACCCACAATTCCATCGTTTCTGAGCAACATGCTTTGCTCT
GACTCGCTTCGCCGAACGCCCGACGCCCTGGTTTTCACCAATGAAAAGGAGAAATACGTCGGGGTGGTCAGTCTCAAGGG
ATTCAGTGGCAATGCTGAAACCGTGGTTAGCCAGCTTGACTGGCTGACCACGATTGAGGGAGAAATCACAGTAGCCCACT
GTTTTCGATTCATTGACAGGGACGTTGCACAAAAGACAATCGAAGACATAGAGCGCTACAACATCTCCAAGTCAGTTCCG
TTTTTTCACCGGATGTACACGACGTTTGCCAAGACCGAGCCCACCAAGTTCAATGAGGGGCGGCTCGCGATGGCTCTGGA
TGCGAAGGCAGCGCTTGTGGATCTGTACCAGGCCAACCGTGCCTTTGGACATCACAATTTGACTGTATTGTGTTTTGGCG
ATACCTATGAGGAGATGAAGAGGGTCAGGCAACAAGTGGTTGAGAACCTGAAATTCTCCCGATTCAACGGGCACGTTGAG
CGCATGCACCAGTTGACCGCTTTCACCCAAACATTACCCGGTCAATGGGGGGCCTCAGTTCGGTGGAACTTTGTCAGCTT
CGGGAATGCGGCCGACATTGCGCCCATCCGCACCCTCACCAAAGGCCCCGAAAAGTGTGTTCATTTTGAAAAAGAAATCA
AGCGCGAATTCCCAGCTCTGACATCCATTCCGACCACCGCAGGGACTCCAGCATTTATTGATTTGTGGGAGCGGGGAGTA
GGGCATTTGAAGGTGATTGGTCCGACGCGTGCTGGCAAAAGTACGGCGACCAACTTTCTTTTGTCGCAATTCAGAAAATA
CGAGCCCTGCCGAACGATTGTTATCGACAAAAACTACTCATGCCGCATCGCGACATTGCTGCAGGACGGAGTCCATGTTG
ACTTGAACCAGAGTGCCAAGAACGGTACACGGATGGCGCCGCTGTCATTACTTGGGCACGAACGACACCATGGGTTTCTT
GTCAACTGGGTGATTGAACTGATTGAGTCGGGTCGCAATGGCGTCATGTGCAGCCCGGCAGAAATTGATCGGATTACTCA
ATCCATCAGAGGGTTGGCTGAACTTGGGCGCAAGCATTGGCGGCTTCACTACTTGGCAACGTCACTCGGGCCTGACCTCG
GGGCCTATCTGGGCCGCTGGATCGCAGGTGGTGCAGACGGTAATTGGTTTGACAATGAGCCAGAAGAAGTCGAGATCGGT
CGTCATATTTGTTTTGAATGCCAGGATCTGTTTGGCAATAAAGTTGTCGCCGGCTTGGCGATGTCGTACCTCTTTTATTT
GATTGAGGGGCTTCTTGACGATTCACCAACAATTGTCAGTATTGAAGAGACTTGGTTCTTCCTGGACAACGAGAAGTTCG
CGAAGAAGATCGACGATTTCCTTCGCACGCTGGGCAAGCGCAACGGCTCGCTATGGATCGTGACCCAGACCATGAAAGAA
ATTCAGGAGTGCTCCATCAAAACATCGATCATGAGCAATATCCCGAACACGATCTACCTGCCTGACCAAAACATAATGAA
CAGTTCGGAACTCTACATTGAGGCAGCAGGTTTATTGCCAGAGGAAATCCAGAGAATCGCTGAGGCAACGGACAAAAAAC
ACTACTACCTCAAGACGCCAAGTATTTCACGAATGTTGGACCTCGAATTGCCAGAAGAAATCGTTGTTTGCATAAGCGCC
GGATCAAGAGCGCGGCATACGTTTGACAAACACTATGCCACCAGAGAAGCCAACGCCGGTTGGAAACAAAGCTATTTCGA
AGAGATGATTGGTTAG

Upstream 100 bases:

>100_bases
TATTCACAAAGTACATGAAAGAAGGCGACTTTTATGACCCTTGGCCAAAACCTAGTCAGCACATGAACAAACGTCCGTTT
GGTGCAGGCCGAGACCTCCT

Downstream 100 bases:

>100_bases
GCAGAGAGATTTTTTTTTGTTAATAGAGGAACCACTATGCGTAGATTGTTTATTTCCCTGTGCTTGGTATTTACTGGAAT
GAATGCGTTTGCCATGGCTT

Product: Type IV secretory pathway VirB4 components-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 831; Mature: 831

Protein sequence:

>831_residues
MLNIADLVAGYNRSARGFQELLPYMCLWDEQTVATLDQGMLALYEYDGLDAEGRSEAETSLAVNAFEQAFSGFGSGSTVW
SYVDRRKTDAYPRGHFSDNVARFIDQTWQDKVTSTQYENKYSLAVHQRANVGTMALFDTVDLLVKEEGLGLTAAFGKAIK
TQLSLKARRSVDERKMQAAKTALEDKLLSLESGMRNLGLRRLGEERLMAELYNRVSPASPSRTAYPVPTIPSFLSNMLCS
DSLRRTPDALVFTNEKEKYVGVVSLKGFSGNAETVVSQLDWLTTIEGEITVAHCFRFIDRDVAQKTIEDIERYNISKSVP
FFHRMYTTFAKTEPTKFNEGRLAMALDAKAALVDLYQANRAFGHHNLTVLCFGDTYEEMKRVRQQVVENLKFSRFNGHVE
RMHQLTAFTQTLPGQWGASVRWNFVSFGNAADIAPIRTLTKGPEKCVHFEKEIKREFPALTSIPTTAGTPAFIDLWERGV
GHLKVIGPTRAGKSTATNFLLSQFRKYEPCRTIVIDKNYSCRIATLLQDGVHVDLNQSAKNGTRMAPLSLLGHERHHGFL
VNWVIELIESGRNGVMCSPAEIDRITQSIRGLAELGRKHWRLHYLATSLGPDLGAYLGRWIAGGADGNWFDNEPEEVEIG
RHICFECQDLFGNKVVAGLAMSYLFYLIEGLLDDSPTIVSIEETWFFLDNEKFAKKIDDFLRTLGKRNGSLWIVTQTMKE
IQECSIKTSIMSNIPNTIYLPDQNIMNSSELYIEAAGLLPEEIQRIAEATDKKHYYLKTPSISRMLDLELPEEIVVCISA
GSRARHTFDKHYATREANAGWKQSYFEEMIG

Sequences:

>Translated_831_residues
MLNIADLVAGYNRSARGFQELLPYMCLWDEQTVATLDQGMLALYEYDGLDAEGRSEAETSLAVNAFEQAFSGFGSGSTVW
SYVDRRKTDAYPRGHFSDNVARFIDQTWQDKVTSTQYENKYSLAVHQRANVGTMALFDTVDLLVKEEGLGLTAAFGKAIK
TQLSLKARRSVDERKMQAAKTALEDKLLSLESGMRNLGLRRLGEERLMAELYNRVSPASPSRTAYPVPTIPSFLSNMLCS
DSLRRTPDALVFTNEKEKYVGVVSLKGFSGNAETVVSQLDWLTTIEGEITVAHCFRFIDRDVAQKTIEDIERYNISKSVP
FFHRMYTTFAKTEPTKFNEGRLAMALDAKAALVDLYQANRAFGHHNLTVLCFGDTYEEMKRVRQQVVENLKFSRFNGHVE
RMHQLTAFTQTLPGQWGASVRWNFVSFGNAADIAPIRTLTKGPEKCVHFEKEIKREFPALTSIPTTAGTPAFIDLWERGV
GHLKVIGPTRAGKSTATNFLLSQFRKYEPCRTIVIDKNYSCRIATLLQDGVHVDLNQSAKNGTRMAPLSLLGHERHHGFL
VNWVIELIESGRNGVMCSPAEIDRITQSIRGLAELGRKHWRLHYLATSLGPDLGAYLGRWIAGGADGNWFDNEPEEVEIG
RHICFECQDLFGNKVVAGLAMSYLFYLIEGLLDDSPTIVSIEETWFFLDNEKFAKKIDDFLRTLGKRNGSLWIVTQTMKE
IQECSIKTSIMSNIPNTIYLPDQNIMNSSELYIEAAGLLPEEIQRIAEATDKKHYYLKTPSISRMLDLELPEEIVVCISA
GSRARHTFDKHYATREANAGWKQSYFEEMIG
>Mature_831_residues
MLNIADLVAGYNRSARGFQELLPYMCLWDEQTVATLDQGMLALYEYDGLDAEGRSEAETSLAVNAFEQAFSGFGSGSTVW
SYVDRRKTDAYPRGHFSDNVARFIDQTWQDKVTSTQYENKYSLAVHQRANVGTMALFDTVDLLVKEEGLGLTAAFGKAIK
TQLSLKARRSVDERKMQAAKTALEDKLLSLESGMRNLGLRRLGEERLMAELYNRVSPASPSRTAYPVPTIPSFLSNMLCS
DSLRRTPDALVFTNEKEKYVGVVSLKGFSGNAETVVSQLDWLTTIEGEITVAHCFRFIDRDVAQKTIEDIERYNISKSVP
FFHRMYTTFAKTEPTKFNEGRLAMALDAKAALVDLYQANRAFGHHNLTVLCFGDTYEEMKRVRQQVVENLKFSRFNGHVE
RMHQLTAFTQTLPGQWGASVRWNFVSFGNAADIAPIRTLTKGPEKCVHFEKEIKREFPALTSIPTTAGTPAFIDLWERGV
GHLKVIGPTRAGKSTATNFLLSQFRKYEPCRTIVIDKNYSCRIATLLQDGVHVDLNQSAKNGTRMAPLSLLGHERHHGFL
VNWVIELIESGRNGVMCSPAEIDRITQSIRGLAELGRKHWRLHYLATSLGPDLGAYLGRWIAGGADGNWFDNEPEEVEIG
RHICFECQDLFGNKVVAGLAMSYLFYLIEGLLDDSPTIVSIEETWFFLDNEKFAKKIDDFLRTLGKRNGSLWIVTQTMKE
IQECSIKTSIMSNIPNTIYLPDQNIMNSSELYIEAAGLLPEEIQRIAEATDKKHYYLKTPSISRMLDLELPEEIVVCISA
GSRARHTFDKHYATREANAGWKQSYFEEMIG

Specific function: Unknown

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbE/virB4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004346
- InterPro:   IPR018145 [H]

Pfam domain/function: PF03135 CagE_TrbE_VirB [H]

EC number: NA

Molecular weight: Translated: 93717; Mature: 93717

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIADLVAGYNRSARGFQELLPYMCLWDEQTVATLDQGMLALYEYDGLDAEGRSEAETS
CCCHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCCCCCCHHHHH
LAVNAFEQAFSGFGSGSTVWSYVDRRKTDAYPRGHFSDNVARFIDQTWQDKVTSTQYENK
HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
YSLAVHQRANVGTMALFDTVDLLVKEEGLGLTAAFGKAIKTQLSLKARRSVDERKMQAAK
EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
TALEDKLLSLESGMRNLGLRRLGEERLMAELYNRVSPASPSRTAYPVPTIPSFLSNMLCS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
DSLRRTPDALVFTNEKEKYVGVVSLKGFSGNAETVVSQLDWLTTIEGEITVAHCFRFIDR
HHHHCCCCCEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHH
DVAQKTIEDIERYNISKSVPFFHRMYTTFAKTEPTKFNEGRLAMALDAKAALVDLYQANR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
AFGHHNLTVLCFGDTYEEMKRVRQQVVENLKFSRFNGHVERMHQLTAFTQTLPGQWGASV
CCCCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCE
RWNFVSFGNAADIAPIRTLTKGPEKCVHFEKEIKREFPALTSIPTTAGTPAFIDLWERGV
EEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
GHLKVIGPTRAGKSTATNFLLSQFRKYEPCRTIVIDKNYSCRIATLLQDGVHVDLNQSAK
CCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEHEEHHCCCEEEECCCCC
NGTRMAPLSLLGHERHHGFLVNWVIELIESGRNGVMCSPAEIDRITQSIRGLAELGRKHW
CCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHH
RLHYLATSLGPDLGAYLGRWIAGGADGNWFDNEPEEVEIGRHICFECQDLFGNKVVAGLA
HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
MSYLFYLIEGLLDDSPTIVSIEETWFFLDNEKFAKKIDDFLRTLGKRNGSLWIVTQTMKE
HHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
IQECSIKTSIMSNIPNTIYLPDQNIMNSSELYIEAAGLLPEEIQRIAEATDKKHYYLKTP
HHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECC
SISRMLDLELPEEIVVCISAGSRARHTFDKHYATREANAGWKQSYFEEMIG
CHHHHEECCCCHHEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MLNIADLVAGYNRSARGFQELLPYMCLWDEQTVATLDQGMLALYEYDGLDAEGRSEAETS
CCCHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCCCCCCHHHHH
LAVNAFEQAFSGFGSGSTVWSYVDRRKTDAYPRGHFSDNVARFIDQTWQDKVTSTQYENK
HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
YSLAVHQRANVGTMALFDTVDLLVKEEGLGLTAAFGKAIKTQLSLKARRSVDERKMQAAK
EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
TALEDKLLSLESGMRNLGLRRLGEERLMAELYNRVSPASPSRTAYPVPTIPSFLSNMLCS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
DSLRRTPDALVFTNEKEKYVGVVSLKGFSGNAETVVSQLDWLTTIEGEITVAHCFRFIDR
HHHHCCCCCEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHH
DVAQKTIEDIERYNISKSVPFFHRMYTTFAKTEPTKFNEGRLAMALDAKAALVDLYQANR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
AFGHHNLTVLCFGDTYEEMKRVRQQVVENLKFSRFNGHVERMHQLTAFTQTLPGQWGASV
CCCCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCE
RWNFVSFGNAADIAPIRTLTKGPEKCVHFEKEIKREFPALTSIPTTAGTPAFIDLWERGV
EEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
GHLKVIGPTRAGKSTATNFLLSQFRKYEPCRTIVIDKNYSCRIATLLQDGVHVDLNQSAK
CCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEHEEHHCCCEEEECCCCC
NGTRMAPLSLLGHERHHGFLVNWVIELIESGRNGVMCSPAEIDRITQSIRGLAELGRKHW
CCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHH
RLHYLATSLGPDLGAYLGRWIAGGADGNWFDNEPEEVEIGRHICFECQDLFGNKVVAGLA
HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
MSYLFYLIEGLLDDSPTIVSIEETWFFLDNEKFAKKIDDFLRTLGKRNGSLWIVTQTMKE
HHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
IQECSIKTSIMSNIPNTIYLPDQNIMNSSELYIEAAGLLPEEIQRIAEATDKKHYYLKTP
HHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECC
SISRMLDLELPEEIVVCISAGSRARHTFDKHYATREANAGWKQSYFEEMIG
CHHHHEECCCCHHEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]