Definition Francisella tularensis subsp. holarctica LVS chromosome, complete genome.
Accession NC_007880
Length 1,895,994

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The map label for this gene is rpe [H]

Identifier: 89256725

GI number: 89256725

Start: 1363183

End: 1363851

Strand: Reverse

Name: rpe [H]

Synonym: FTL_1432

Alternate gene names: 89256725

Gene position: 1363851-1363183 (Counterclockwise)

Preceding gene: 89256727

Following gene: 89256724

Centisome position: 71.93

GC content: 37.22

Gene sequence:

>669_bases
ATGAAACATATTCAAATTAATCCTTCTATACTCTCTGCAGATCTTGCCAGATTAGGGGATGATGTCAAGGCAGTTTTAGC
GGCAGGGGCTGATAATATTCATTTTGATGTTATGGATAATCACTATGTGCCTAATCTGACATTTGGACCGATGGTGCTCA
AGGCTTTGAGAGATTATGGTATAACTGCTGGCATGGATGTTCACCTTATGGTTAAACCTGTAGATGCTTTAATTGAGAGT
TTTGCCAAAGCTGGAGCAACTAGTATTGTTTTTCATCCAGAGGCGAGTGAGCATATTGATAGAAGCTTACAACTAATCAA
ATCTTTTGGCATTCAAGCTGGGCTTGCTTTAAATCCTGCTACAGGTATAGATTGTTTGAAGTATGTTGAGAGTAATATTG
ATAGGGTGCTGATAATGTCAGTAAACCCTGGTTTTGGGGGACAAAAATTTATTCCAGCTATGCTTGATAAGGCTAAAGAA
ATTTCTAAATGGATTAGCTCAACTGATAGAGATATTTTGCTAGAGATAGATGGTGGCGTAAATCCGTATAATATTGCTGA
AATAGCTGCATGTGGAGTAAATGCCTTTGTTGCTGGTTCAGCTATTTTTAATTCTGATAGCTATAAGCAAACTATTGATA
AGATGAGAGATGAGCTCAATAAAGTCTAA

Upstream 100 bases:

>100_bases
AAACTAAGGTTTATAGACACAAATTTATATTTTATATAACCAAATTTTACTTTCAATATGATAGAATTTTCAAGTATATT
AAGATATTTAAATTAGCTAT

Downstream 100 bases:

>100_bases
TTTAGTGATCATTCTCAAAACAATAGAGCTAGTAATATCTGTAATACTTGTATTACTAAGTTACTCTATACCTTTGCATC
TACTAAATTATGATACTAGT

Product: D-ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIES
FAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKE
ISKWISSTDRDILLEIDGGVNPYNIAEIAACGVNAFVAGSAIFNSDSYKQTIDKMRDELNKV

Sequences:

>Translated_222_residues
MKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIES
FAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKE
ISKWISSTDRDILLEIDGGVNPYNIAEIAACGVNAFVAGSAIFNSDSYKQTIDKMRDELNKV
>Mature_222_residues
MKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIES
FAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKE
ISKWISSTDRDILLEIDGGVNPYNIAEIAACGVNAFVAGSAIFNSDSYKQTIDKMRDELNKV

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=214, Percent_Identity=39.2523364485981, Blast_Score=159, Evalue=2e-39,
Organism=Homo sapiens, GI219879828, Length=214, Percent_Identity=37.8504672897196, Blast_Score=146, Evalue=2e-35,
Organism=Homo sapiens, GI24307923, Length=169, Percent_Identity=31.9526627218935, Blast_Score=95, Evalue=5e-20,
Organism=Escherichia coli, GI1789788, Length=222, Percent_Identity=64.4144144144144, Blast_Score=291, Evalue=2e-80,
Organism=Escherichia coli, GI1790523, Length=203, Percent_Identity=34.9753694581281, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1790754, Length=210, Percent_Identity=28.0952380952381, Blast_Score=97, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17552948, Length=216, Percent_Identity=40.2777777777778, Blast_Score=159, Evalue=1e-39,
Organism=Saccharomyces cerevisiae, GI6322341, Length=228, Percent_Identity=36.4035087719298, Blast_Score=152, Evalue=3e-38,
Organism=Drosophila melanogaster, GI24586301, Length=213, Percent_Identity=38.9671361502347, Blast_Score=155, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24016; Mature: 24016

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYG
CCEEEECHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC
ITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPA
CCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEECCC
TGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGV
CHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
NPYNIAEIAACGVNAFVAGSAIFNSDSYKQTIDKMRDELNKV
CCHHHHHHHHHCCHHHHCCCHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYG
CCEEEECHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC
ITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPA
CCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEECCC
TGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGV
CHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
NPYNIAEIAACGVNAFVAGSAIFNSDSYKQTIDKMRDELNKV
CCHHHHHHHHHCCHHHHCCCHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]