Definition | Francisella tularensis subsp. holarctica LVS chromosome, complete genome. |
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Accession | NC_007880 |
Length | 1,895,994 |
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The map label for this gene is rpe [H]
Identifier: 89256725
GI number: 89256725
Start: 1363183
End: 1363851
Strand: Reverse
Name: rpe [H]
Synonym: FTL_1432
Alternate gene names: 89256725
Gene position: 1363851-1363183 (Counterclockwise)
Preceding gene: 89256727
Following gene: 89256724
Centisome position: 71.93
GC content: 37.22
Gene sequence:
>669_bases ATGAAACATATTCAAATTAATCCTTCTATACTCTCTGCAGATCTTGCCAGATTAGGGGATGATGTCAAGGCAGTTTTAGC GGCAGGGGCTGATAATATTCATTTTGATGTTATGGATAATCACTATGTGCCTAATCTGACATTTGGACCGATGGTGCTCA AGGCTTTGAGAGATTATGGTATAACTGCTGGCATGGATGTTCACCTTATGGTTAAACCTGTAGATGCTTTAATTGAGAGT TTTGCCAAAGCTGGAGCAACTAGTATTGTTTTTCATCCAGAGGCGAGTGAGCATATTGATAGAAGCTTACAACTAATCAA ATCTTTTGGCATTCAAGCTGGGCTTGCTTTAAATCCTGCTACAGGTATAGATTGTTTGAAGTATGTTGAGAGTAATATTG ATAGGGTGCTGATAATGTCAGTAAACCCTGGTTTTGGGGGACAAAAATTTATTCCAGCTATGCTTGATAAGGCTAAAGAA ATTTCTAAATGGATTAGCTCAACTGATAGAGATATTTTGCTAGAGATAGATGGTGGCGTAAATCCGTATAATATTGCTGA AATAGCTGCATGTGGAGTAAATGCCTTTGTTGCTGGTTCAGCTATTTTTAATTCTGATAGCTATAAGCAAACTATTGATA AGATGAGAGATGAGCTCAATAAAGTCTAA
Upstream 100 bases:
>100_bases AAACTAAGGTTTATAGACACAAATTTATATTTTATATAACCAAATTTTACTTTCAATATGATAGAATTTTCAAGTATATT AAGATATTTAAATTAGCTAT
Downstream 100 bases:
>100_bases TTTAGTGATCATTCTCAAAACAATAGAGCTAGTAATATCTGTAATACTTGTATTACTAAGTTACTCTATACCTTTGCATC TACTAAATTATGATACTAGT
Product: D-ribulose-phosphate 3-epimerase
Products: NA
Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]
Number of amino acids: Translated: 222; Mature: 222
Protein sequence:
>222_residues MKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIES FAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKE ISKWISSTDRDILLEIDGGVNPYNIAEIAACGVNAFVAGSAIFNSDSYKQTIDKMRDELNKV
Sequences:
>Translated_222_residues MKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIES FAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKE ISKWISSTDRDILLEIDGGVNPYNIAEIAACGVNAFVAGSAIFNSDSYKQTIDKMRDELNKV >Mature_222_residues MKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIES FAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKE ISKWISSTDRDILLEIDGGVNPYNIAEIAACGVNAFVAGSAIFNSDSYKQTIDKMRDELNKV
Specific function: Unknown
COG id: COG0036
COG function: function code G; Pentose-5-phosphate-3-epimerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]
Homologues:
Organism=Homo sapiens, GI40385883, Length=214, Percent_Identity=39.2523364485981, Blast_Score=159, Evalue=2e-39, Organism=Homo sapiens, GI219879828, Length=214, Percent_Identity=37.8504672897196, Blast_Score=146, Evalue=2e-35, Organism=Homo sapiens, GI24307923, Length=169, Percent_Identity=31.9526627218935, Blast_Score=95, Evalue=5e-20, Organism=Escherichia coli, GI1789788, Length=222, Percent_Identity=64.4144144144144, Blast_Score=291, Evalue=2e-80, Organism=Escherichia coli, GI1790523, Length=203, Percent_Identity=34.9753694581281, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1790754, Length=210, Percent_Identity=28.0952380952381, Blast_Score=97, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17552948, Length=216, Percent_Identity=40.2777777777778, Blast_Score=159, Evalue=1e-39, Organism=Saccharomyces cerevisiae, GI6322341, Length=228, Percent_Identity=36.4035087719298, Blast_Score=152, Evalue=3e-38, Organism=Drosophila melanogaster, GI24586301, Length=213, Percent_Identity=38.9671361502347, Blast_Score=155, Evalue=3e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000056 - InterPro: IPR011060 [H]
Pfam domain/function: PF00834 Ribul_P_3_epim [H]
EC number: =5.1.3.1 [H]
Molecular weight: Translated: 24016; Mature: 24016
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: PS01085 RIBUL_P_3_EPIMER_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYG CCEEEECHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC ITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPA CCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEECCC TGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGV CHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC NPYNIAEIAACGVNAFVAGSAIFNSDSYKQTIDKMRDELNKV CCHHHHHHHHHCCHHHHCCCHHCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYG CCEEEECHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC ITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPA CCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEECCC TGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGV CHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC NPYNIAEIAACGVNAFVAGSAIFNSDSYKQTIDKMRDELNKV CCHHHHHHHHHCCHHHHCCCHHCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]