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The map label for this gene is yjjV [H]

Identifier: 89256652

GI number: 89256652

Start: 1285550

End: 1286224

Strand: Direct

Name: yjjV [H]

Synonym: FTL_1351

Alternate gene names: 89256652

Gene position: 1285550-1286224 (Clockwise)

Preceding gene: 89256650

Following gene: 89256653

Centisome position: 67.8

GC content: 26.96

Gene sequence:

>675_bases
ATGTTTATTGATACACATTGTCATTTAGATTTTGATATTTTTGATAAAACTCGTCAAAACATACTACAAAACTGTAACAA
GCTAGGTGTTAACTATTTTATAAATCCTGCTACTCAAAGAAATAATTGGGATAAGCTAATACAAATAAATAGAGAGTTTA
GCAAAACTGTTATATGTTTTGGGTTACATCCTATATTTATTGATAAGCATATTCATACTGATTTAAAAGATTTAGAGTTA
TATAGCCAAAAGCATCCAACAAAACTTATTGGTGAAATTGGTCTAGATAAAAGATTTAAAAACTTCAACAAACAACTAGA
GTTTTTCTCAGCACAAATTAATATAGCTAAAAACCTTGATAAACAAGTAATTATCCATGCTTTTAATGCTAATTATGATA
TTGCACAGAAATATATAGATCTGGGTTTTAAATTAGGTATTGGCACAATAATTTCTCAACCACAAGCAAAACTTAAACAA
GCTCTAGCAAAAATTAAGCCAGAAAATATTGTTTTGGAAACAGACTCTCCAGATATGTTGCTTTATAACAGTACTGACAA
TATTAATACTCCAGAAAACATCCCTAAGATTTTTGAGTTATTAAGCAATATTTATCAACTAAATCCTGATATACTAAAAC
AACAAATTTATAATACTAGCTTAGAATTTATCTAG

Upstream 100 bases:

>100_bases
TGAGATCCTCAAACAAGTTCAGGATGACGAAAAAGTATTATTCTCATAAATATTGAGCTATATTATAACTTAATAACCCA
AAGAATTTAACTAGACATCG

Downstream 100 bases:

>100_bases
AAAATGTATATATCTAACTTACGCTTACAAAATTTTAGAAATATACCTGCTAAAAGCTTTGATTTTAAAAATAGTATAAA
TTTTATAGTTGGTAAAAATG

Product: TatD related DNAse family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MFIDTHCHLDFDIFDKTRQNILQNCNKLGVNYFINPATQRNNWDKLIQINREFSKTVICFGLHPIFIDKHIHTDLKDLEL
YSQKHPTKLIGEIGLDKRFKNFNKQLEFFSAQINIAKNLDKQVIIHAFNANYDIAQKYIDLGFKLGIGTIISQPQAKLKQ
ALAKIKPENIVLETDSPDMLLYNSTDNINTPENIPKIFELLSNIYQLNPDILKQQIYNTSLEFI

Sequences:

>Translated_224_residues
MFIDTHCHLDFDIFDKTRQNILQNCNKLGVNYFINPATQRNNWDKLIQINREFSKTVICFGLHPIFIDKHIHTDLKDLEL
YSQKHPTKLIGEIGLDKRFKNFNKQLEFFSAQINIAKNLDKQVIIHAFNANYDIAQKYIDLGFKLGIGTIISQPQAKLKQ
ALAKIKPENIVLETDSPDMLLYNSTDNINTPENIPKIFELLSNIYQLNPDILKQQIYNTSLEFI
>Mature_224_residues
MFIDTHCHLDFDIFDKTRQNILQNCNKLGVNYFINPATQRNNWDKLIQINREFSKTVICFGLHPIFIDKHIHTDLKDLEL
YSQKHPTKLIGEIGLDKRFKNFNKQLEFFSAQINIAKNLDKQVIIHAFNANYDIAQKYIDLGFKLGIGTIISQPQAKLKQ
ALAKIKPENIVLETDSPDMLLYNSTDNINTPENIPKIFELLSNIYQLNPDILKQQIYNTSLEFI

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Escherichia coli, GI87082439, Length=248, Percent_Identity=29.4354838709677, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI1787342, Length=244, Percent_Identity=23.3606557377049, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 26067; Mature: 26067

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIDTHCHLDFDIFDKTRQNILQNCNKLGVNYFINPATQRNNWDKLIQINREFSKTVICF
CEECCEEECCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHEECCHHHHEEEEE
GLHPIFIDKHIHTDLKDLELYSQKHPTKLIGEIGLDKRFKNFNKQLEFFSAQINIAKNLD
ECCHHEECCHHCCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
KQVIIHAFNANYDIAQKYIDLGFKLGIGTIISQPQAKLKQALAKIKPENIVLETDSPDML
CEEEEEEECCCHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCEE
LYNSTDNINTPENIPKIFELLSNIYQLNPDILKQQIYNTSLEFI
EEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFIDTHCHLDFDIFDKTRQNILQNCNKLGVNYFINPATQRNNWDKLIQINREFSKTVICF
CEECCEEECCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHEECCHHHHEEEEE
GLHPIFIDKHIHTDLKDLELYSQKHPTKLIGEIGLDKRFKNFNKQLEFFSAQINIAKNLD
ECCHHEECCHHCCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
KQVIIHAFNANYDIAQKYIDLGFKLGIGTIISQPQAKLKQALAKIKPENIVLETDSPDML
CEEEEEEECCCHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCEE
LYNSTDNINTPENIPKIFELLSNIYQLNPDILKQQIYNTSLEFI
EEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]