Definition | Francisella tularensis subsp. holarctica LVS chromosome, complete genome. |
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Accession | NC_007880 |
Length | 1,895,994 |
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The map label for this gene is 89256626
Identifier: 89256626
GI number: 89256626
Start: 1254565
End: 1255560
Strand: Reverse
Name: 89256626
Synonym: FTL_1317
Alternate gene names: NA
Gene position: 1255560-1254565 (Counterclockwise)
Preceding gene: 89256628
Following gene: 89256624
Centisome position: 66.22
GC content: 25.8
Gene sequence:
>996_bases ATGTATTTAAATAAAGTACACTACATATGGATGGGATCATTAATCCCAGATAAATATATAAATAATATTTTTTACTTACT ATCCCAATCGGATCATTACATTAATATATGGACAGATAGACCAGAAGAAACTAGATTGAAATTTTTAGATAAAATAGGAG GATATAGTGATTTACAAAGAAATAAAATTACCAATAGACTAGAATTTAAACAAATTTTTGAATTAGAGAATTGGTGTCAA ATCAATCTAAGTAATTATTTAACACTTATTCAGATGAAGACTCTCTCGGAAACTTTTATGTTCGAATATCCTAATTATTC AGATAGATATAATAAATACAGCCTAGAAGTACTATATAAGTTAGGCAATTTAGCAACACTAAGTGATATATTAAGATTAG TTATCCTATATAAAGAAGGTGGTATTTATATAGATTGTGATAATACATTTAAAGGTCAACATATAAAGTATAATATTAAA TATTCTAAAAATCCTAATCAATATAATATCTATGCAAATTGTAAATTTAGTTTATATTCTTTTCATGATATAGCTGGCAA TAGTGTTTTAGTTGCTAATTCTGGTGCTCAAGGATGCGTGGAAATACTTAAACTATCTTTAGACACTATATATAAACAAC AAACTGGTCGAGAGCTAATAGACAATATAGAGAAGGCGAAAAGAATATTATTTACTGAGAAAAGCTATTTAAAAGATGTT TTTGACTATTTTATGTCTAATAGTTATATTGAAAAAGATAAAGATCTAAGAAGATATGGAAAAGATCCAAATGGATATAA ACTACAAACATTAAAAGATTATGGAGGTGTTAACCCATACATATATCATTATGGGTATCCTTATGCATATTTAGCAATGC AAATTGGTCCAGAGGTATTAAAAGAATTTGAAAGAAATAAAGCATTTTCTAAACGAATTACTGAAATTTCAATTTTTCAT ACAATAACTATTAATTCAGATCAAGCTTGGCTTTAA
Upstream 100 bases:
>100_bases TTTTCAATTCAATTTATACTTTCTTATGCTAGAACCTAGATGATTTTACCACTTAAATAATATATATTTATATAAGTATT TATATAAAAATTTATATAAA
Downstream 100 bases:
>100_bases AAAAAATAATGAGTATAAAAAGGCGGTATTATTCAACTATTTCCTTTTTATACTAAAATCTAATATTACCGAAATTTAAA TGTAAAACATACACCTTAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 331
Protein sequence:
>331_residues MYLNKVHYIWMGSLIPDKYINNIFYLLSQSDHYINIWTDRPEETRLKFLDKIGGYSDLQRNKITNRLEFKQIFELENWCQ INLSNYLTLIQMKTLSETFMFEYPNYSDRYNKYSLEVLYKLGNLATLSDILRLVILYKEGGIYIDCDNTFKGQHIKYNIK YSKNPNQYNIYANCKFSLYSFHDIAGNSVLVANSGAQGCVEILKLSLDTIYKQQTGRELIDNIEKAKRILFTEKSYLKDV FDYFMSNSYIEKDKDLRRYGKDPNGYKLQTLKDYGGVNPYIYHYGYPYAYLAMQIGPEVLKEFERNKAFSKRITEISIFH TITINSDQAWL
Sequences:
>Translated_331_residues MYLNKVHYIWMGSLIPDKYINNIFYLLSQSDHYINIWTDRPEETRLKFLDKIGGYSDLQRNKITNRLEFKQIFELENWCQ INLSNYLTLIQMKTLSETFMFEYPNYSDRYNKYSLEVLYKLGNLATLSDILRLVILYKEGGIYIDCDNTFKGQHIKYNIK YSKNPNQYNIYANCKFSLYSFHDIAGNSVLVANSGAQGCVEILKLSLDTIYKQQTGRELIDNIEKAKRILFTEKSYLKDV FDYFMSNSYIEKDKDLRRYGKDPNGYKLQTLKDYGGVNPYIYHYGYPYAYLAMQIGPEVLKEFERNKAFSKRITEISIFH TITINSDQAWL >Mature_331_residues MYLNKVHYIWMGSLIPDKYINNIFYLLSQSDHYINIWTDRPEETRLKFLDKIGGYSDLQRNKITNRLEFKQIFELENWCQ INLSNYLTLIQMKTLSETFMFEYPNYSDRYNKYSLEVLYKLGNLATLSDILRLVILYKEGGIYIDCDNTFKGQHIKYNIK YSKNPNQYNIYANCKFSLYSFHDIAGNSVLVANSGAQGCVEILKLSLDTIYKQQTGRELIDNIEKAKRILFTEKSYLKDV FDYFMSNSYIEKDKDLRRYGKDPNGYKLQTLKDYGGVNPYIYHYGYPYAYLAMQIGPEVLKEFERNKAFSKRITEISIFH TITINSDQAWL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39226; Mature: 39226
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYLNKVHYIWMGSLIPDKYINNIFYLLSQSDHYINIWTDRPEETRLKFLDKIGGYSDLQR CCCCEEEEEEECCCCCHHHHHHHEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCHHHH NKITNRLEFKQIFELENWCQINLSNYLTLIQMKTLSETFMFEYPNYSDRYNKYSLEVLYK HHHHHHHHHHHHHCCCCCEEEEHHHHEEEEEHHHHHHHEEEECCCCCCCCCHHHHHHHHH LGNLATLSDILRLVILYKEGGIYIDCDNTFKGQHIKYNIKYSKNPNQYNIYANCKFSLYS HCCHHHHHHHHHHHEEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEE FHDIAGNSVLVANSGAQGCVEILKLSLDTIYKQQTGRELIDNIEKAKRILFTEKSYLKDV EEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHH FDYFMSNSYIEKDKDLRRYGKDPNGYKLQTLKDYGGVNPYIYHYGYPYAYLAMQIGPEVL HHHHHCCCCCCCCHHHHHHCCCCCCEEEEEEHHCCCCCCEEEECCCCHHHHHHHHCHHHH KEFERNKAFSKRITEISIFHTITINSDQAWL HHHHHHHHHHHHHCEEEEEEEEEECCCCCCC >Mature Secondary Structure MYLNKVHYIWMGSLIPDKYINNIFYLLSQSDHYINIWTDRPEETRLKFLDKIGGYSDLQR CCCCEEEEEEECCCCCHHHHHHHEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCHHHH NKITNRLEFKQIFELENWCQINLSNYLTLIQMKTLSETFMFEYPNYSDRYNKYSLEVLYK HHHHHHHHHHHHHCCCCCEEEEHHHHEEEEEHHHHHHHEEEECCCCCCCCCHHHHHHHHH LGNLATLSDILRLVILYKEGGIYIDCDNTFKGQHIKYNIKYSKNPNQYNIYANCKFSLYS HCCHHHHHHHHHHHEEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEE FHDIAGNSVLVANSGAQGCVEILKLSLDTIYKQQTGRELIDNIEKAKRILFTEKSYLKDV EEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHH FDYFMSNSYIEKDKDLRRYGKDPNGYKLQTLKDYGGVNPYIYHYGYPYAYLAMQIGPEVL HHHHHCCCCCCCCHHHHHHCCCCCCEEEEEEHHCCCCCCEEEECCCCHHHHHHHHCHHHH KEFERNKAFSKRITEISIFHTITINSDQAWL HHHHHHHHHHHHHCEEEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA