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The map label for this gene is yfcC [H]

Identifier: 89256622

GI number: 89256622

Start: 1251093

End: 1251827

Strand: Direct

Name: yfcC [H]

Synonym: FTL_1313

Alternate gene names: 89256622

Gene position: 1251093-1251827 (Clockwise)

Preceding gene: 89256621

Following gene: 89256625

Centisome position: 65.99

GC content: 35.37

Gene sequence:

>735_bases
ATGTATATTTATGATAATTTATATAGAAACTCGGATGAGCATAGTCTTGAGCAAACTCAAAAGATGTGTATATACTCATG
GCTAATACTTGCCAGCCTAATAATTACTATTGTTTGGTTAGTATATGGTGTTGTAGAACTTGGCTACTATATCCCAGAGA
TTGCAACACTTTTTACAATCCTTGGGCTTTTAACTGGTTTGTTTGCAGTAGTTGGTAAAGTAAATGGTATGAATCTAAGT
ATTGCTATCGATGCTTTCAAAAATGGCGCTAAAGATTTACTCCCTGTTTGTTTAATCATTGGTTTTGCCTACGGTCTGAT
ATATCTGATGGGTGGCTCAAATCCCGAAGACTATACCATGCTAAATACAATCTTGCATTACGCATCTGAGATTATTTCTG
GCACCAATCAATATGTTTCCGCATTAGGAATGTTTTTCTTCCAGTCAATCTTTAACTTCTTTGTAACCTCTGGCTCAGGT
CAAGCAGCTCTTACCATGCCAATTATGTCGCTATTAGCAGACTTAACTGGGTTAAGTAGACAAATTGCTGTTTTAGCTTT
CCAAATTGGCGATGGTTGGACACACTGTATAATGCCTACTTCAGCAACTTTAATTGCAGCTTTAGGTGTTGCAAGAATAC
CTTACGGCTTATGGTTAAAATTTATCTTTAAATTCTACCTATATCTAATGACTTTAAGCTCAATTATGGTAGTTATCTGT
TTATATTGGGTATAA

Upstream 100 bases:

>100_bases
GTCTTTTTAGAATAATTATGTGGTTTATATTTACATTATCAATAAGTATTTTTGCAGTCTTTTATGCGTTAAAAATACAA
AAAAACCACAATCATCAACG

Downstream 100 bases:

>100_bases
ATAGAGAATCACCTCCCCTTGCAAGCAAGGTACTCCTCCATAGGAGGAGAATAATCCTATACCCATATTGTCATTGCATG
GCTCGGTTGCTGAGCTTGTC

Product: short-chain fatty acids transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MYIYDNLYRNSDEHSLEQTQKMCIYSWLILASLIITIVWLVYGVVELGYYIPEIATLFTILGLLTGLFAVVGKVNGMNLS
IAIDAFKNGAKDLLPVCLIIGFAYGLIYLMGGSNPEDYTMLNTILHYASEIISGTNQYVSALGMFFFQSIFNFFVTSGSG
QAALTMPIMSLLADLTGLSRQIAVLAFQIGDGWTHCIMPTSATLIAALGVARIPYGLWLKFIFKFYLYLMTLSSIMVVIC
LYWV

Sequences:

>Translated_244_residues
MYIYDNLYRNSDEHSLEQTQKMCIYSWLILASLIITIVWLVYGVVELGYYIPEIATLFTILGLLTGLFAVVGKVNGMNLS
IAIDAFKNGAKDLLPVCLIIGFAYGLIYLMGGSNPEDYTMLNTILHYASEIISGTNQYVSALGMFFFQSIFNFFVTSGSG
QAALTMPIMSLLADLTGLSRQIAVLAFQIGDGWTHCIMPTSATLIAALGVARIPYGLWLKFIFKFYLYLMTLSSIMVVIC
LYWV
>Mature_244_residues
MYIYDNLYRNSDEHSLEQTQKMCIYSWLILASLIITIVWLVYGVVELGYYIPEIATLFTILGLLTGLFAVVGKVNGMNLS
IAIDAFKNGAKDLLPVCLIIGFAYGLIYLMGGSNPEDYTMLNTILHYASEIISGTNQYVSALGMFFFQSIFNFFVTSGSG
QAALTMPIMSLLADLTGLSRQIAVLAFQIGDGWTHCIMPTSATLIAALGVARIPYGLWLKFIFKFYLYLMTLSSIMVVIC
LYWV

Specific function: Unknown

COG id: COG1288

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycgA [H]

Homologues:

Organism=Escherichia coli, GI87082082, Length=234, Percent_Identity=42.7350427350427, Blast_Score=194, Evalue=5e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018387
- InterPro:   IPR018385 [H]

Pfam domain/function: PF03606 DcuC [H]

EC number: NA

Molecular weight: Translated: 27133; Mature: 27133

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIYDNLYRNSDEHSLEQTQKMCIYSWLILASLIITIVWLVYGVVELGYYIPEIATLFTI
CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLLTGLFAVVGKVNGMNLSIAIDAFKNGAKDLLPVCLIIGFAYGLIYLMGGSNPEDYTM
HHHHHHHHHHHHCCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LNTILHYASEIISGTNQYVSALGMFFFQSIFNFFVTSGSGQAALTMPIMSLLADLTGLSR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
QIAVLAFQIGDGWTHCIMPTSATLIAALGVARIPYGLWLKFIFKFYLYLMTLSSIMVVIC
HHHHHEEEECCCCEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LYWV
HHHC
>Mature Secondary Structure
MYIYDNLYRNSDEHSLEQTQKMCIYSWLILASLIITIVWLVYGVVELGYYIPEIATLFTI
CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLLTGLFAVVGKVNGMNLSIAIDAFKNGAKDLLPVCLIIGFAYGLIYLMGGSNPEDYTM
HHHHHHHHHHHHCCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LNTILHYASEIISGTNQYVSALGMFFFQSIFNFFVTSGSGQAALTMPIMSLLADLTGLSR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
QIAVLAFQIGDGWTHCIMPTSATLIAALGVARIPYGLWLKFIFKFYLYLMTLSSIMVVIC
HHHHHEEEECCCCEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LYWV
HHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 7883769 [H]