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The map label for this gene is ybbD [H]

Identifier: 89256591

GI number: 89256591

Start: 1221264

End: 1222931

Strand: Direct

Name: ybbD [H]

Synonym: FTL_1282

Alternate gene names: 89256591

Gene position: 1221264-1222931 (Clockwise)

Preceding gene: 89256590

Following gene: 89256599

Centisome position: 64.41

GC content: 30.16

Gene sequence:

>1668_bases
ATGTCTACAAACTCAAATATAAGACAAAAACTAGGTCAATTAATTATGATGGATTTTCGCTATTGGGGTGAAGATTCAAA
TAATCAGCGTATACCTTTTACAAAAACTAATGATATCGTCAATAAGATCTTTAAAGACTATAATTTAGGTGGTTTTATCC
TTTTTAGAGAGAATATTCAAAATAATGAGCAAGTTATCTCTCTATTAAGAGATCTTCAAGCTAACACCAATACACCAATA
TTTTTCGCTACAGATCAAGAAGGTGGCAGAGTTAATCGCTTACAACAAGGTACTAGTGGTTGCGGTAATATGGCACTAGC
TGCAACAGATAATCCTCATAATGCCTATACTATGGCTAAAATAATTGGCGATGAATTATATTCTTTAGGTATCAATATTA
ATTTTGCTCCAGCTGTGGATGTTAACTCTAACAAAAATAATCCTATTATTGGTGTAAGATCATACTCAGATAATCCTGAT
ATAGTTATTGACTACGCCAAAAATGCTATAAATGGTTATCATGATGCAAAAATTATAGACTGCATTAAACATTTCCCTGG
TCATGGTGATACTGCAACAGATAGTCATTTAGGCAATGTAAACTTAGATAAAACTTTGAAAGAATTACAGACAACAGAGC
TACTACCCTTTAGTAAACTTGCTAGAGATTGTAGTATGATAATGACAGCACATATTAGTGTACCAGCCCTAGATGACACC
CAGTATCAATCAGTTTCAACAAGTGAGAATATTTATGTGCCAGCCACCCTCTCTTATAAAATAATAACTAAATTACTAAA
ACAACAAATGAAATTTGATGGTTTAGTAGTATCTGATGCCATGGACATGCATGCTATTGCTAAACACTTTGGAACTATTG
AGGCTTCTAAATTAGCTATCTTAGCTGGTATAGATATTTTATTAATGCCTGTTCGAGTATGGTCAGAAAATGATCTTTAT
AAATTAGAAGAGCTTTTTTGTGAACTAGAAAAAGGATATAATCAAAATTCTAATTTTGCTAATGCAGTTGATAATGTCTA
TACGAATATTACTGATTTCAAAGCAAAACATAAACTCGATGAAAGTTTAATATTCAAGCTCTCACAAGATGAGCAATTAA
AATATGCTAATCAAATAGTTAACTCTAATAAACATCAACAAATAGCTTTAGATATTGCTAAACAAAGTACAACTGTAGTT
AAAAATTCAGGTATTATTCCATGCGATCTCAATAAGCTAAAAAATATCTTGATTGTAGATAGTGATAACCAACGCTTAGC
GGATTTTCATAGCGAGTTGCAGAAAATAGTATTAGACAATAACTCAAATGTTATTATTAACTGCGAAAATATTAATAACC
ATAATATTAAAACTATTATCGAAAATGCCGATCTGATCCTATTAATTTCAGCGAATCTTCGTGAATATAATCAGACCTAT
AGTTATATAACTTCTATAAAGCCAGAGCAAACTATAAATATAGCAGCACTTACTCCTTATGATATTAATTATATAGATAA
TATTATTAATTATGTTTGTATTTATGGTGCAACTTCTATGGATCAGACAAACTATACAAAGACTTCACTAAAGATTAATA
TTCAAACAACATTAGAAAATATTTTTGGTAATAAAGAGATTAAAGGAGTACTACCAGTCAGTTTATAA

Upstream 100 bases:

>100_bases
AGGTCAGAAAATTTTGGTAAGTCATGGTTGGGGAATGTAAACAAAGCTAATACTTCTGTGATATATTTATTCTCATATTA
ATATTATTCTAAAACTGTAG

Downstream 100 bases:

>100_bases
ATTAATTTATCAACTTTAATCTAATTCTCTTGAAAAAATTTTTTAGCAAGACAAATGGTTTTTTCAATATCTTCATCACT
ATGAGCTATTGAAATAAAAC

Product: Beta-glucosidase-related glycosidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 555; Mature: 554

Protein sequence:

>555_residues
MSTNSNIRQKLGQLIMMDFRYWGEDSNNQRIPFTKTNDIVNKIFKDYNLGGFILFRENIQNNEQVISLLRDLQANTNTPI
FFATDQEGGRVNRLQQGTSGCGNMALAATDNPHNAYTMAKIIGDELYSLGININFAPAVDVNSNKNNPIIGVRSYSDNPD
IVIDYAKNAINGYHDAKIIDCIKHFPGHGDTATDSHLGNVNLDKTLKELQTTELLPFSKLARDCSMIMTAHISVPALDDT
QYQSVSTSENIYVPATLSYKIITKLLKQQMKFDGLVVSDAMDMHAIAKHFGTIEASKLAILAGIDILLMPVRVWSENDLY
KLEELFCELEKGYNQNSNFANAVDNVYTNITDFKAKHKLDESLIFKLSQDEQLKYANQIVNSNKHQQIALDIAKQSTTVV
KNSGIIPCDLNKLKNILIVDSDNQRLADFHSELQKIVLDNNSNVIINCENINNHNIKTIIENADLILLISANLREYNQTY
SYITSIKPEQTINIAALTPYDINYIDNIINYVCIYGATSMDQTNYTKTSLKINIQTTLENIFGNKEIKGVLPVSL

Sequences:

>Translated_555_residues
MSTNSNIRQKLGQLIMMDFRYWGEDSNNQRIPFTKTNDIVNKIFKDYNLGGFILFRENIQNNEQVISLLRDLQANTNTPI
FFATDQEGGRVNRLQQGTSGCGNMALAATDNPHNAYTMAKIIGDELYSLGININFAPAVDVNSNKNNPIIGVRSYSDNPD
IVIDYAKNAINGYHDAKIIDCIKHFPGHGDTATDSHLGNVNLDKTLKELQTTELLPFSKLARDCSMIMTAHISVPALDDT
QYQSVSTSENIYVPATLSYKIITKLLKQQMKFDGLVVSDAMDMHAIAKHFGTIEASKLAILAGIDILLMPVRVWSENDLY
KLEELFCELEKGYNQNSNFANAVDNVYTNITDFKAKHKLDESLIFKLSQDEQLKYANQIVNSNKHQQIALDIAKQSTTVV
KNSGIIPCDLNKLKNILIVDSDNQRLADFHSELQKIVLDNNSNVIINCENINNHNIKTIIENADLILLISANLREYNQTY
SYITSIKPEQTINIAALTPYDINYIDNIINYVCIYGATSMDQTNYTKTSLKINIQTTLENIFGNKEIKGVLPVSL
>Mature_554_residues
STNSNIRQKLGQLIMMDFRYWGEDSNNQRIPFTKTNDIVNKIFKDYNLGGFILFRENIQNNEQVISLLRDLQANTNTPIF
FATDQEGGRVNRLQQGTSGCGNMALAATDNPHNAYTMAKIIGDELYSLGININFAPAVDVNSNKNNPIIGVRSYSDNPDI
VIDYAKNAINGYHDAKIIDCIKHFPGHGDTATDSHLGNVNLDKTLKELQTTELLPFSKLARDCSMIMTAHISVPALDDTQ
YQSVSTSENIYVPATLSYKIITKLLKQQMKFDGLVVSDAMDMHAIAKHFGTIEASKLAILAGIDILLMPVRVWSENDLYK
LEELFCELEKGYNQNSNFANAVDNVYTNITDFKAKHKLDESLIFKLSQDEQLKYANQIVNSNKHQQIALDIAKQSTTVVK
NSGIIPCDLNKLKNILIVDSDNQRLADFHSELQKIVLDNNSNVIINCENINNHNIKTIIENADLILLISANLREYNQTYS
YITSIKPEQTINIAALTPYDINYIDNIINYVCIYGATSMDQTNYTKTSLKINIQTTLENIFGNKEIKGVLPVSL

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=268, Percent_Identity=29.8507462686567, Blast_Score=121, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 62332; Mature: 62200

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: PS00775 GLYCOSYL_HYDROL_F3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNSNIRQKLGQLIMMDFRYWGEDSNNQRIPFTKTNDIVNKIFKDYNLGGFILFRENIQ
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC
NNEQVISLLRDLQANTNTPIFFATDQEGGRVNRLQQGTSGCGNMALAATDNPHNAYTMAK
CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
IIGDELYSLGININFAPAVDVNSNKNNPIIGVRSYSDNPDIVIDYAKNAINGYHDAKIID
HHHHHHHHCCEEEEEECEEECCCCCCCCEEEEEECCCCCCEEEEECHHHCCCCCCHHHHH
CIKHFPGHGDTATDSHLGNVNLDKTLKELQTTELLPFSKLARDCSMIMTAHISVPALDDT
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECCCCCCC
QYQSVSTSENIYVPATLSYKIITKLLKQQMKFDGLVVSDAMDMHAIAKHFGTIEASKLAI
CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHCCCCHHHEEE
LAGIDILLMPVRVWSENDLYKLEELFCELEKGYNQNSNFANAVDNVYTNITDFKAKHKLD
EECCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHCCC
ESLIFKLSQDEQLKYANQIVNSNKHQQIALDIAKQSTTVVKNSGIIPCDLNKLKNILIVD
HHHEEEECCCHHHHHHHHHHCCCCCCEEEEEEHHCCEEEEECCCCCEECHHHCCCEEEEE
SDNQRLADFHSELQKIVLDNNSNVIINCENINNHNIKTIIENADLILLISANLREYNQTY
CCCCHHHHHHHHHHHHEEECCCCEEEEECCCCCCCEEEEEECCCEEEEEECCHHHHHHHH
SYITSIKPEQTINIAALTPYDINYIDNIINYVCIYGATSMDQTNYTKTSLKINIQTTLEN
HHHHCCCCCCEEEEEEECCCCHHHHHHHHHHEEEECCCCCCCCCCEEEEEEEEEHHHHHH
IFGNKEIKGVLPVSL
HCCCCCCCEEECCCC
>Mature Secondary Structure 
STNSNIRQKLGQLIMMDFRYWGEDSNNQRIPFTKTNDIVNKIFKDYNLGGFILFRENIQ
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC
NNEQVISLLRDLQANTNTPIFFATDQEGGRVNRLQQGTSGCGNMALAATDNPHNAYTMAK
CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
IIGDELYSLGININFAPAVDVNSNKNNPIIGVRSYSDNPDIVIDYAKNAINGYHDAKIID
HHHHHHHHCCEEEEEECEEECCCCCCCCEEEEEECCCCCCEEEEECHHHCCCCCCHHHHH
CIKHFPGHGDTATDSHLGNVNLDKTLKELQTTELLPFSKLARDCSMIMTAHISVPALDDT
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECCCCCCC
QYQSVSTSENIYVPATLSYKIITKLLKQQMKFDGLVVSDAMDMHAIAKHFGTIEASKLAI
CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHCCCCHHHEEE
LAGIDILLMPVRVWSENDLYKLEELFCELEKGYNQNSNFANAVDNVYTNITDFKAKHKLD
EECCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHCCC
ESLIFKLSQDEQLKYANQIVNSNKHQQIALDIAKQSTTVVKNSGIIPCDLNKLKNILIVD
HHHEEEECCCHHHHHHHHHHCCCCCCEEEEEEHHCCEEEEECCCCCEECHHHCCCEEEEE
SDNQRLADFHSELQKIVLDNNSNVIINCENINNHNIKTIIENADLILLISANLREYNQTY
CCCCHHHHHHHHHHHHEEECCCCEEEEECCCCCCCEEEEEECCCEEEEEECCHHHHHHHH
SYITSIKPEQTINIAALTPYDINYIDNIINYVCIYGATSMDQTNYTKTSLKINIQTTLEN
HHHHCCCCCCEEEEEEECCCCHHHHHHHHHHEEEECCCCCCCCCCEEEEEEEEEHHHHHH
IFGNKEIKGVLPVSL
HCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]