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The map label for this gene is rnhB [H]

Identifier: 89256503

GI number: 89256503

Start: 1132053

End: 1132616

Strand: Direct

Name: rnhB [H]

Synonym: FTL_1182

Alternate gene names: 89256503

Gene position: 1132053-1132616 (Clockwise)

Preceding gene: 89256502

Following gene: 89256504

Centisome position: 59.71

GC content: 31.74

Gene sequence:

>564_bases
ATGATTATACTAGGTATAGATGAAGCAGGGCGTGGACCATTATCAGGGCCTGTAGTTGCTGCAGGAGTTATATTGGATCA
AGATAAAATTATTGATGGTCTTGCTGATTCAAAGAAGTTAACTGAAAAAAAACGTCAATCACTCTATCAGCAAATAATAA
CTCACGCAAAGGCTTACACAATAGTTGAAATTAGCCCTCAGCAAATCGATGAGTTAAATATCCTTCAAGCAACATTAAAA
GCTATACATCAAGTTGCAAATAATTTAGAAAGACAGTTTGATAAAGTCTTAGTTGATGGTAATAAATTACCAAATTGGGA
TTATAATTCAGAAGCTATAGTAAAAGGAGACTCAAAAATTATAGAAATATCTGCAGCTTCGATATTGGCAAAGGTGCATA
GAGATAATATCTGTCTTGAGCATGATAGATTATATCCACAATATGGTTTTGCTAAACATAAGGGTTATCCAACAAAAGAG
CATTTAGAGAATATAAAAAAATATGGTGTATTAGATATCCATAGGAAAAGTTATAAACCAGTACAAGTGTTATTAAATGA
ATAA

Upstream 100 bases:

>100_bases
GATAAAGTGCGCAGACTTTTTCAAAGATCCGAACTTGAGAGTCAAGAAGTGAATATTTTGAGAGGTTTTTTAACCTCATT
AGAAAATCAGGATAAGTAGT

Downstream 100 bases:

>100_bases
CTCTGAAAACTACTACACAGCAGGAAAGAGTTTAGGGCTTTTTGCTCTTACAGCTACTCTTGTAATGACAGAGTTAAATA
TATCGACTTTAGTAGGTTTC

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIVEISPQQIDELNILQATLK
AIHQVANNLERQFDKVLVDGNKLPNWDYNSEAIVKGDSKIIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKE
HLENIKKYGVLDIHRKSYKPVQVLLNE

Sequences:

>Translated_187_residues
MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIVEISPQQIDELNILQATLK
AIHQVANNLERQFDKVLVDGNKLPNWDYNSEAIVKGDSKIIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKE
HLENIKKYGVLDIHRKSYKPVQVLLNE
>Mature_187_residues
MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIVEISPQQIDELNILQATLK
AIHQVANNLERQFDKVLVDGNKLPNWDYNSEAIVKGDSKIIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKE
HLENIKKYGVLDIHRKSYKPVQVLLNE

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=185, Percent_Identity=49.1891891891892, Blast_Score=184, Evalue=4e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 21031; Mature: 21031

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT
CEEEECCCCCCCCCCCCCEEHHEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEE
IVEISPQQIDELNILQATLKAIHQVANNLERQFDKVLVDGNKLPNWDYNSEAIVKGDSKI
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCEE
IEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKP
EEEHHHHHHHHHHHCCEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHCCCEEECCCCCCC
VQVLLNE
CEEEECC
>Mature Secondary Structure
MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT
CEEEECCCCCCCCCCCCCEEHHEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEE
IVEISPQQIDELNILQATLKAIHQVANNLERQFDKVLVDGNKLPNWDYNSEAIVKGDSKI
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCEE
IEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKP
EEEHHHHHHHHHHHCCEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHCCCEEECCCCCCC
VQVLLNE
CEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA