Definition | Francisella tularensis subsp. holarctica LVS chromosome, complete genome. |
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Accession | NC_007880 |
Length | 1,895,994 |
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The map label for this gene is lldD [H]
Identifier: 89256319
GI number: 89256319
Start: 938212
End: 939381
Strand: Direct
Name: lldD [H]
Synonym: FTL_0970
Alternate gene names: 89256319
Gene position: 938212-939381 (Clockwise)
Preceding gene: 89256318
Following gene: 89256320
Centisome position: 49.48
GC content: 32.39
Gene sequence:
>1170_bases ATGGCTTGCAAATATAGGAAAATTGCTATGAAAATAAATAATATTTATGATATTACAGATATGCATAAAGCAGCTAAAAA GAGATTGCCAAGAGTTTTTTTAGACTATATTGATAGCGGCTCATATCAGCAACAAACAGTCTATGAGAATGAGCAAGCGT TTAGAAAAATTAGAATAAATCAAAGCGCATTTAAAGATTGTAGTCAGAGAAACCAAACTATAGAGATATTTGGTTTCAAA TCTAGTGTTCCATTTGCAATAGCACCAACAGGCTTAGCTGGGATGTTTTGGCCGAAAGGTGAAATAGCATTAGCCTTAGC TGCTGAAAAATTAGATATTGCATATACAATGAGTACTATGGCTATTTGTTCTTTAGAAACGGTAGCAAAAGAAGCTAATA ATCATTTTTGGTTTCAACTCTATCTTATGAAAGATAGAGGATTTACTAAGTCGTTACTTGAAAGAGCAAAGGCTTGTGGT TGTCAGACAATTTTTGTTAATGCTGATTTACCAGTAAGTGGTATTAGATATAGTGATATGCGTAATGGTTTATCAATTCC TCCTAAATTTGGAATTAGGGATATAATTAATATTACAGCTAAACAAAGTTGGGTTTGGGGATATTTATTAAGTAAATACA AACAGTTTGGTAATTTAAGTGGTCATATTCCAACTGGTGCTAAAGGGATGAAAAGTGTTACAGATTTTATGGACTCACAA TTTGATCAAAGTGTCACTTGGAAGGATATAGAGTGGTTAAGAAATATTTGGGATGGTAATTTGATAATAAAAGGTCTTTT AAATACACAAGGTGCTGAAAATGCAGTAAAGGTTGGTGCTGATGGTATTGTTGTATCTAATCATGGAGGAAGACAACTTG ATGGTGTGTTACCAACTATAGAAGCTTTGCCAGCAATATCTGATAAAGTAAAAGGTGATATAAAAATAATTTTAGACAGT GGTATTAGATCGGATCAAGATATCATAAAAGCTTTAGCCTTAGGTGCGGATTTTACTTTGGTTGGTAGACCATTTCTATA TGGATTGTCAGCATTCGGTCAAAAAGGTGTAGAAAAAGTTTATGACATACTCAAAAAAGAGATAGATAATACTATGGCAT TAGCAGGAATTTCAGATTTAAATAATATTTCAACTGATGTTGTAGTTTAG
Upstream 100 bases:
>100_bases GATGTCTCTAAAATCTTGGCTATATGATGGCATTTTTATTAGACATTATAACATTTCTACAAATATCTTTTTCTACAAAT ATCTTTCGGATTAACTATAT
Downstream 100 bases:
>100_bases TAAATTAGACAGGTAAATTATTATGCAAATAATAACTGTAAGTGAGTATTTAAGAACAAGATTAAGTGAGTTAGGAATAA AAGATATAATAGGTGTTGCT
Product: L-lactate dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 389; Mature: 388
Protein sequence:
>389_residues MACKYRKIAMKINNIYDITDMHKAAKKRLPRVFLDYIDSGSYQQQTVYENEQAFRKIRINQSAFKDCSQRNQTIEIFGFK SSVPFAIAPTGLAGMFWPKGEIALALAAEKLDIAYTMSTMAICSLETVAKEANNHFWFQLYLMKDRGFTKSLLERAKACG CQTIFVNADLPVSGIRYSDMRNGLSIPPKFGIRDIINITAKQSWVWGYLLSKYKQFGNLSGHIPTGAKGMKSVTDFMDSQ FDQSVTWKDIEWLRNIWDGNLIIKGLLNTQGAENAVKVGADGIVVSNHGGRQLDGVLPTIEALPAISDKVKGDIKIILDS GIRSDQDIIKALALGADFTLVGRPFLYGLSAFGQKGVEKVYDILKKEIDNTMALAGISDLNNISTDVVV
Sequences:
>Translated_389_residues MACKYRKIAMKINNIYDITDMHKAAKKRLPRVFLDYIDSGSYQQQTVYENEQAFRKIRINQSAFKDCSQRNQTIEIFGFK SSVPFAIAPTGLAGMFWPKGEIALALAAEKLDIAYTMSTMAICSLETVAKEANNHFWFQLYLMKDRGFTKSLLERAKACG CQTIFVNADLPVSGIRYSDMRNGLSIPPKFGIRDIINITAKQSWVWGYLLSKYKQFGNLSGHIPTGAKGMKSVTDFMDSQ FDQSVTWKDIEWLRNIWDGNLIIKGLLNTQGAENAVKVGADGIVVSNHGGRQLDGVLPTIEALPAISDKVKGDIKIILDS GIRSDQDIIKALALGADFTLVGRPFLYGLSAFGQKGVEKVYDILKKEIDNTMALAGISDLNNISTDVVV >Mature_388_residues ACKYRKIAMKINNIYDITDMHKAAKKRLPRVFLDYIDSGSYQQQTVYENEQAFRKIRINQSAFKDCSQRNQTIEIFGFKS SVPFAIAPTGLAGMFWPKGEIALALAAEKLDIAYTMSTMAICSLETVAKEANNHFWFQLYLMKDRGFTKSLLERAKACGC QTIFVNADLPVSGIRYSDMRNGLSIPPKFGIRDIINITAKQSWVWGYLLSKYKQFGNLSGHIPTGAKGMKSVTDFMDSQF DQSVTWKDIEWLRNIWDGNLIIKGLLNTQGAENAVKVGADGIVVSNHGGRQLDGVLPTIEALPAISDKVKGDIKIILDSG IRSDQDIIKALALGADFTLVGRPFLYGLSAFGQKGVEKVYDILKKEIDNTMALAGISDLNNISTDVVV
Specific function: Unknown
COG id: COG1304
COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FMN hydroxy acid dehydrogenase domain [H]
Homologues:
Organism=Homo sapiens, GI11068137, Length=372, Percent_Identity=34.6774193548387, Blast_Score=234, Evalue=1e-61, Organism=Homo sapiens, GI54234014, Length=372, Percent_Identity=35.4838709677419, Blast_Score=229, Evalue=5e-60, Organism=Homo sapiens, GI7705393, Length=372, Percent_Identity=35.4838709677419, Blast_Score=229, Evalue=5e-60, Organism=Escherichia coli, GI1790033, Length=374, Percent_Identity=41.4438502673797, Blast_Score=322, Evalue=3e-89, Organism=Caenorhabditis elegans, GI193208036, Length=377, Percent_Identity=32.0954907161804, Blast_Score=210, Evalue=1e-54, Organism=Caenorhabditis elegans, GI32566217, Length=288, Percent_Identity=30.5555555555556, Blast_Score=146, Evalue=2e-35, Organism=Saccharomyces cerevisiae, GI6323587, Length=388, Percent_Identity=29.8969072164948, Blast_Score=172, Evalue=1e-43, Organism=Drosophila melanogaster, GI281363140, Length=373, Percent_Identity=36.9973190348526, Blast_Score=238, Evalue=5e-63, Organism=Drosophila melanogaster, GI78707190, Length=373, Percent_Identity=36.9973190348526, Blast_Score=238, Evalue=5e-63, Organism=Drosophila melanogaster, GI78707188, Length=373, Percent_Identity=36.9973190348526, Blast_Score=238, Evalue=5e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR012133 - InterPro: IPR000262 - InterPro: IPR008259 - InterPro: IPR020920 [H]
Pfam domain/function: PF01070 FMN_dh [H]
EC number: =1.1.2.3 [H]
Molecular weight: Translated: 43195; Mature: 43064
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: PS00557 FMN_HYDROXY_ACID_DH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MACKYRKIAMKINNIYDITDMHKAAKKRLPRVFLDYIDSGSYQQQTVYENEQAFRKIRIN CCCCHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC QSAFKDCSQRNQTIEIFGFKSSVPFAIAPTGLAGMFWPKGEIALALAAEKLDIAYTMSTM HHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHH AICSLETVAKEANNHFWFQLYLMKDRGFTKSLLERAKACGCQTIFVNADLPVSGIRYSDM HHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHH RNGLSIPPKFGIRDIINITAKQSWVWGYLLSKYKQFGNLSGHIPTGAKGMKSVTDFMDSQ CCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH FDQSVTWKDIEWLRNIWDGNLIIKGLLNTQGAENAVKVGADGIVVSNHGGRQLDGVLPTI HCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEECCCEEEEECCCCCCCCCCCHHH EALPAISDKVKGDIKIILDSGIRSDQDIIKALALGADFTLVGRPFLYGLSAFGQKGVEKV HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHH YDILKKEIDNTMALAGISDLNNISTDVVV HHHHHHHHCCCEEEECCHHHCCCCCCCCC >Mature Secondary Structure ACKYRKIAMKINNIYDITDMHKAAKKRLPRVFLDYIDSGSYQQQTVYENEQAFRKIRIN CCCHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC QSAFKDCSQRNQTIEIFGFKSSVPFAIAPTGLAGMFWPKGEIALALAAEKLDIAYTMSTM HHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHH AICSLETVAKEANNHFWFQLYLMKDRGFTKSLLERAKACGCQTIFVNADLPVSGIRYSDM HHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHH RNGLSIPPKFGIRDIINITAKQSWVWGYLLSKYKQFGNLSGHIPTGAKGMKSVTDFMDSQ CCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH FDQSVTWKDIEWLRNIWDGNLIIKGLLNTQGAENAVKVGADGIVVSNHGGRQLDGVLPTI HCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEECCCEEEEECCCCCCCCCCCHHH EALPAISDKVKGDIKIILDSGIRSDQDIIKALALGADFTLVGRPFLYGLSAFGQKGVEKV HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHH YDILKKEIDNTMALAGISDLNNISTDVVV HHHHHHHHCCCEEEECCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA