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The map label for this gene is ybeY [C]

Identifier: 89256242

GI number: 89256242

Start: 862706

End: 863227

Strand: Reverse

Name: ybeY [C]

Synonym: FTL_0884

Alternate gene names: 89256242

Gene position: 863227-862706 (Counterclockwise)

Preceding gene: 89256243

Following gene: 89256241

Centisome position: 45.53

GC content: 33.72

Gene sequence:

>522_bases
ATGCTTATGATAAGCATGAAGAGAAAACTAAAAATGGATAATCTAAATATAAATTTCATCAATGATGACGAACACCCCAT
ACCTAGTCAAGATTTACTGCTAAAATGCCTACAACTTGTAGCTGACAAACATCATATCAGTCATGCTGAAGTTAATCTAA
ATATTGTCTCGAATGATGAAATTCAACAAATAAATAAACAGTTCCGCAATAAAGATAAACCAACAAATATCATTTCTTTT
GAATTTGAAAAGCCTCAAGGCTTACCTGATGATATTGCTAATGATTTCTTAGGTGATATTGTAATAGCGCCAGCGGTATT
AGAGAATGAAGCCAAAGAGCAGAACAAAGAGATCAATGACCACTGGCAACATATTTTTATCCACGGTTTGTTACACTTGC
TTGGTTATGATCACCAAGATGATCAAGAAGCCGAAGTGATGGAGAATTTAGAAATACAACTACTAGCACAGCTAGGAATA
GCTAATCCATATATTGAACAAGAGAATCAAAATGGCAGATAA

Upstream 100 bases:

>100_bases
AGCCATGCCTTATCAATTCTTAATGATATCGAAGGTGTAGCTATTAGCTACCTGAAATCAGTTGATATTGTCCGCCATCA
AATAGTTCAAAAAATAATTA

Downstream 100 bases:

>100_bases
TAATCCTTTTATAAAAAGACTTACCTCAAGCATTTTTAATATAAAAAGTGAAGAAGCTCTTATCTATGCTATCAATAGAG
CTGCTGCTAATGAGGTTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MLMISMKRKLKMDNLNINFINDDEHPIPSQDLLLKCLQLVADKHHISHAEVNLNIVSNDEIQQINKQFRNKDKPTNIISF
EFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNKEINDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGI
ANPYIEQENQNGR

Sequences:

>Translated_173_residues
MLMISMKRKLKMDNLNINFINDDEHPIPSQDLLLKCLQLVADKHHISHAEVNLNIVSNDEIQQINKQFRNKDKPTNIISF
EFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNKEINDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGI
ANPYIEQENQNGR
>Mature_173_residues
MLMISMKRKLKMDNLNINFINDDEHPIPSQDLLLKCLQLVADKHHISHAEVNLNIVSNDEIQQINKQFRNKDKPTNIISF
EFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNKEINDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGI
ANPYIEQENQNGR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=120, Percent_Identity=46.6666666666667, Blast_Score=105, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 20003; Mature: 20003

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMISMKRKLKMDNLNINFINDDEHPIPSQDLLLKCLQLVADKHHISHAEVNLNIVSNDE
CEEECCCHHHECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHH
IQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNKEIND
HHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
HWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPYIEQENQNGR
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLMISMKRKLKMDNLNINFINDDEHPIPSQDLLLKCLQLVADKHHISHAEVNLNIVSNDE
CEEECCCHHHECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHH
IQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNKEIND
HHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
HWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPYIEQENQNGR
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA