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The map label for this gene is yecD [H]

Identifier: 89256206

GI number: 89256206

Start: 827533

End: 828105

Strand: Direct

Name: yecD [H]

Synonym: FTL_0846

Alternate gene names: 89256206

Gene position: 827533-828105 (Clockwise)

Preceding gene: 89256205

Following gene: 89256207

Centisome position: 43.65

GC content: 35.08

Gene sequence:

>573_bases
ATGAAAAATACTTTTGTAATAGTTGCTGATTTTATAAATGAAATCGTGGATGAAAAGGGTGCTTTCGGTGCTCATAATGC
ACAAAGAATTAAAGATGATGAAACCATGCAAAAAGCTAATAAGTTAATAGCTTGGGCAAGAGATAACAGTATTCAGATTG
CTCATGTAAAAGTAGGTTTTACTAAGGAGTATAAAGAGTGCTCCAAAGTATCTCCGATGTTTAAAAAAGCTCCGGAGTAT
GGTGTATTACAGTTGGGTACTTGGGCAACAGAATTTCATCCTCAAATGGATGTTCAAGAGCATGATATTATCATCACAAA
GCATCGCGTGAGTGCTTTATATGGTACAGATCTAGAGCTTATATTACGTGCAAATAGTATTGAGCATGTAATTATCTGTG
GGGTATCAACTAGTTATGTAGTAGAGTCTACAGTCCGTGAGTTGCATGATCGTGATTTTAAGGTTACTGTAATAGCAGAT
GCATGTAATGCCGCTAGTCAACAAGCTCATGAAGCTAGCTTAACAAACTTAAGTAGAATTGCTGATATTGTAGATATTGA
TGATTTTATTTAA

Upstream 100 bases:

>100_bases
TTTATAATATATCAATGAGTTATTTATAAATGTGTGGGATCTTGATGATATGTGTGGCTAGCGTATTGTCATTGATCAAA
AAAGCTTAAAGGAGAATAAA

Downstream 100 bases:

>100_bases
TGCTAATTTGTTGTAAATAAATCTCACGAACTGTGTTGTATCATGCTATAATACAGTGTTCACTAAATTAATAAAATAAT
ATAAGCGAGAAATCATGAAA

Product: isochorismatase hydrolase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MKNTFVIVADFINEIVDEKGAFGAHNAQRIKDDETMQKANKLIAWARDNSIQIAHVKVGFTKEYKECSKVSPMFKKAPEY
GVLQLGTWATEFHPQMDVQEHDIIITKHRVSALYGTDLELILRANSIEHVIICGVSTSYVVESTVRELHDRDFKVTVIAD
ACNAASQQAHEASLTNLSRIADIVDIDDFI

Sequences:

>Translated_190_residues
MKNTFVIVADFINEIVDEKGAFGAHNAQRIKDDETMQKANKLIAWARDNSIQIAHVKVGFTKEYKECSKVSPMFKKAPEY
GVLQLGTWATEFHPQMDVQEHDIIITKHRVSALYGTDLELILRANSIEHVIICGVSTSYVVESTVRELHDRDFKVTVIAD
ACNAASQQAHEASLTNLSRIADIVDIDDFI
>Mature_190_residues
MKNTFVIVADFINEIVDEKGAFGAHNAQRIKDDETMQKANKLIAWARDNSIQIAHVKVGFTKEYKECSKVSPMFKKAPEY
GVLQLGTWATEFHPQMDVQEHDIIITKHRVSALYGTDLELILRANSIEHVIICGVSTSYVVESTVRELHDRDFKVTVIAD
ACNAASQQAHEASLTNLSRIADIVDIDDFI

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

Organism=Escherichia coli, GI87081992, Length=191, Percent_Identity=34.0314136125654, Blast_Score=94, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 21332; Mature: 21332

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNTFVIVADFINEIVDEKGAFGAHNAQRIKDDETMQKANKLIAWARDNSIQIAHVKVGF
CCCEEEEHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHEEEEECCCCEEEEEEEECC
TKEYKECSKVSPMFKKAPEYGVLQLGTWATEFHPQMDVQEHDIIITKHRVSALYGTDLEL
CHHHHHHHHCCHHHHCCCCCCEEEECCCHHHCCCCCCCCCCCEEEEEEHHHHHHCCCEEE
ILRANSIEHVIICGVSTSYVVESTVRELHDRDFKVTVIADACNAASQQAHEASLTNLSRI
EEECCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
ADIVDIDDFI
HHHHHHHCCC
>Mature Secondary Structure
MKNTFVIVADFINEIVDEKGAFGAHNAQRIKDDETMQKANKLIAWARDNSIQIAHVKVGF
CCCEEEEHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHEEEEECCCCEEEEEEEECC
TKEYKECSKVSPMFKKAPEYGVLQLGTWATEFHPQMDVQEHDIIITKHRVSALYGTDLEL
CHHHHHHHHCCHHHHCCCCCCEEEECCCHHHCCCCCCCCCCCEEEEEEHHHHHHCCCEEE
ILRANSIEHVIICGVSTSYVVESTVRELHDRDFKVTVIADACNAASQQAHEASLTNLSRI
EEECCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
ADIVDIDDFI
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]