| Definition | Francisella tularensis subsp. holarctica LVS chromosome, complete genome. |
|---|---|
| Accession | NC_007880 |
| Length | 1,895,994 |
Click here to switch to the map view.
The map label for this gene is yrbF [C]
Identifier: 89256085
GI number: 89256085
Start: 683967
End: 684728
Strand: Reverse
Name: yrbF [C]
Synonym: FTL_0696
Alternate gene names: 89256085
Gene position: 684728-683967 (Counterclockwise)
Preceding gene: 89256086
Following gene: 89256084
Centisome position: 36.11
GC content: 32.02
Gene sequence:
>762_bases ATGAGTGAAAGTTTAATTCAAGTAAGAGACCTAAGCACAAAATTTGGTAAAGAGTGGATTCATAAAGACCTAAATCTTGA TATCCCTTTTGAGAAAATAAGCTGTATCATCGGTGCTAGTGGTTGTGGCAAAACTACATTAATGCGTGAAATTCTTATGC TTCAACCAATTTACTCTGGTAAAATTTTCTTGCTTGGTCAAGAAATATCAAAACTTGCTGATAACCCAATCAAGCGTAAA GCAATATCCAGTAAAATGAGTATGATGTTTCAACATTGTGCACTTTTTTCTTCTTTAACTAATTTGCAAAATGTAATTTT TCCTCTTAGACAACATACAAAACTACCTATAGACATACTTACTGACATAGCAATTATAAAATTAAAAATGGTTGGTCTTA AAGAAGAAGCTTTTAATAAATACCCTTCTGAAATAAGTGGTGGAATGTTAAAGAGAGTGGCTCTAGCAAGAACAATAGCT TTAGATCCTAAAGTTGTATTTTTAGATGAGCCTAATGCCGGCTTAGATCCATACTCTGCAAGAGCAATGGATGATCTCAT TTTATATCTAAAAGAAGAGCTTAAGATGTCAGTAGTAATGATTACTCATGATCTTAGCACTATTTGGCATATTGTTGACG ATATAATATATATGGATGAAAAGAGAATAATGCTGCATGATAGTGTTGAGTTTGTCTCACAGCAAACACAGTATGAAAGT ATAAGAAAATTTTTTGACTCACATAATGATGGTAAGTATTAG
Upstream 100 bases:
>100_bases CAACTACTAATAGTGTGGTTTACTCAATCTTTTTAATAATTGTTATTGATGCTATTTTTGCAGTAGCATTAAATGGTGTT GCTTAGGGAGATGTTAGACT
Downstream 100 bases:
>100_bases GAGCTTATAATGAACGAAAATAGTATAAAAAATCTAATCGCGGGATTATTCGTGATTTTTATGGTATTTGTAATGATATT TATAGGTTTCTTTTTATCAG
Product: ABC transporter, ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MSESLIQVRDLSTKFGKEWIHKDLNLDIPFEKISCIIGASGCGKTTLMREILMLQPIYSGKIFLLGQEISKLADNPIKRK AISSKMSMMFQHCALFSSLTNLQNVIFPLRQHTKLPIDILTDIAIIKLKMVGLKEEAFNKYPSEISGGMLKRVALARTIA LDPKVVFLDEPNAGLDPYSARAMDDLILYLKEELKMSVVMITHDLSTIWHIVDDIIYMDEKRIMLHDSVEFVSQQTQYES IRKFFDSHNDGKY
Sequences:
>Translated_253_residues MSESLIQVRDLSTKFGKEWIHKDLNLDIPFEKISCIIGASGCGKTTLMREILMLQPIYSGKIFLLGQEISKLADNPIKRK AISSKMSMMFQHCALFSSLTNLQNVIFPLRQHTKLPIDILTDIAIIKLKMVGLKEEAFNKYPSEISGGMLKRVALARTIA LDPKVVFLDEPNAGLDPYSARAMDDLILYLKEELKMSVVMITHDLSTIWHIVDDIIYMDEKRIMLHDSVEFVSQQTQYES IRKFFDSHNDGKY >Mature_252_residues SESLIQVRDLSTKFGKEWIHKDLNLDIPFEKISCIIGASGCGKTTLMREILMLQPIYSGKIFLLGQEISKLADNPIKRKA ISSKMSMMFQHCALFSSLTNLQNVIFPLRQHTKLPIDILTDIAIIKLKMVGLKEEAFNKYPSEISGGMLKRVALARTIAL DPKVVFLDEPNAGLDPYSARAMDDLILYLKEELKMSVVMITHDLSTIWHIVDDIIYMDEKRIMLHDSVEFVSQQTQYESI RKFFDSHNDGKY
Specific function: Unknown
COG id: COG1127
COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI105990541, Length=222, Percent_Identity=29.2792792792793, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI21536376, Length=204, Percent_Identity=27.9411764705882, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI116734710, Length=218, Percent_Identity=27.9816513761468, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI171184400, Length=210, Percent_Identity=27.1428571428571, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI27881501, Length=218, Percent_Identity=27.5229357798165, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI30795238, Length=209, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI47078218, Length=184, Percent_Identity=28.804347826087, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI11967969, Length=213, Percent_Identity=26.2910798122066, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI45446740, Length=184, Percent_Identity=28.804347826087, Blast_Score=66, Evalue=2e-11, Organism=Escherichia coli, GI1789586, Length=248, Percent_Identity=36.2903225806452, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI1788761, Length=249, Percent_Identity=32.5301204819277, Blast_Score=134, Evalue=7e-33, Organism=Escherichia coli, GI1786398, Length=226, Percent_Identity=31.4159292035398, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787029, Length=227, Percent_Identity=34.8017621145374, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI87081709, Length=248, Percent_Identity=30.241935483871, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI1789672, Length=245, Percent_Identity=30.6122448979592, Blast_Score=117, Evalue=5e-28, Organism=Escherichia coli, GI1789962, Length=212, Percent_Identity=34.9056603773585, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1789032, Length=224, Percent_Identity=31.25, Blast_Score=109, Evalue=1e-25, Organism=Escherichia coli, GI87081791, Length=247, Percent_Identity=31.5789473684211, Blast_Score=107, Evalue=5e-25, Organism=Escherichia coli, GI1788450, Length=243, Percent_Identity=27.9835390946502, Blast_Score=107, Evalue=6e-25, Organism=Escherichia coli, GI1788225, Length=247, Percent_Identity=30.3643724696356, Blast_Score=107, Evalue=6e-25, Organism=Escherichia coli, GI1788644, Length=254, Percent_Identity=30.7086614173228, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1786872, Length=220, Percent_Identity=28.6363636363636, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1787370, Length=220, Percent_Identity=33.6363636363636, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787500, Length=230, Percent_Identity=30, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1790162, Length=225, Percent_Identity=31.5555555555556, Blast_Score=103, Evalue=8e-24, Organism=Escherichia coli, GI1790467, Length=235, Percent_Identity=28.936170212766, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1789864, Length=246, Percent_Identity=27.2357723577236, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI87081834, Length=209, Percent_Identity=32.5358851674641, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1786563, Length=240, Percent_Identity=29.5833333333333, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI145693107, Length=261, Percent_Identity=29.8850574712644, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=29.5774647887324, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787089, Length=242, Percent_Identity=28.099173553719, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1787164, Length=221, Percent_Identity=29.8642533936652, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1786703, Length=210, Percent_Identity=29.5238095238095, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI87082267, Length=206, Percent_Identity=29.6116504854369, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787758, Length=236, Percent_Identity=28.8135593220339, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI48994997, Length=226, Percent_Identity=25.6637168141593, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1787547, Length=262, Percent_Identity=27.8625954198473, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI48994943, Length=244, Percent_Identity=25.8196721311475, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786698, Length=216, Percent_Identity=28.7037037037037, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789873, Length=182, Percent_Identity=33.5164835164835, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787105, Length=210, Percent_Identity=29.5238095238095, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787712, Length=222, Percent_Identity=27.027027027027, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786253, Length=189, Percent_Identity=30.6878306878307, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1788165, Length=238, Percent_Identity=27.7310924369748, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1789963, Length=230, Percent_Identity=28.2608695652174, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1789890, Length=249, Percent_Identity=24.0963855421687, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1788506, Length=264, Percent_Identity=24.2424242424242, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1790544, Length=260, Percent_Identity=26.5384615384615, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI48994883, Length=245, Percent_Identity=26.9387755102041, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1788053, Length=207, Percent_Identity=28.9855072463768, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787112, Length=232, Percent_Identity=28.0172413793103, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786803, Length=229, Percent_Identity=24.8908296943231, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787759, Length=239, Percent_Identity=23.0125523012552, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI87081782, Length=225, Percent_Identity=25.3333333333333, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1789593, Length=225, Percent_Identity=22.6666666666667, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787143, Length=208, Percent_Identity=25.4807692307692, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI193208177, Length=212, Percent_Identity=27.8301886792453, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17569143, Length=210, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI25146777, Length=246, Percent_Identity=27.2357723577236, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17567265, Length=232, Percent_Identity=25, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI212646699, Length=207, Percent_Identity=26.5700483091787, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17567269, Length=211, Percent_Identity=27.0142180094787, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17569145, Length=213, Percent_Identity=25.8215962441315, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71992285, Length=242, Percent_Identity=26.0330578512397, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17543740, Length=189, Percent_Identity=27.5132275132275, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17565938, Length=189, Percent_Identity=28.042328042328, Blast_Score=64, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17510237, Length=205, Percent_Identity=23.9024390243902, Blast_Score=64, Evalue=1e-10, Organism=Drosophila melanogaster, GI28574150, Length=186, Percent_Identity=33.8709677419355, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI116007328, Length=186, Percent_Identity=33.8709677419355, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24643674, Length=232, Percent_Identity=25.8620689655172, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24648314, Length=234, Percent_Identity=27.3504273504274, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24666092, Length=230, Percent_Identity=25.2173913043478, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI85725262, Length=226, Percent_Identity=26.1061946902655, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI21357907, Length=210, Percent_Identity=29.0476190476191, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24582014, Length=207, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24582012, Length=207, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI17136592, Length=217, Percent_Identity=25.3456221198157, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 28918; Mature: 28787
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSESLIQVRDLSTKFGKEWIHKDLNLDIPFEKISCIIGASGCGKTTLMREILMLQPIYSG CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHEEECCCCCHHHHHHHHHHHCCCCCC KIFLLGQEISKLADNPIKRKAISSKMSMMFQHCALFSSLTNLQNVIFPLRQHTKLPIDIL EEEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH TDIAIIKLKMVGLKEEAFNKYPSEISGGMLKRVALARTIALDPKVVFLDEPNAGLDPYSA HHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHH RAMDDLILYLKEELKMSVVMITHDLSTIWHIVDDIIYMDEKRIMLHDSVEFVSQQTQYES HHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHH IRKFFDSHNDGKY HHHHHCCCCCCCC >Mature Secondary Structure SESLIQVRDLSTKFGKEWIHKDLNLDIPFEKISCIIGASGCGKTTLMREILMLQPIYSG CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHEEECCCCCHHHHHHHHHHHCCCCCC KIFLLGQEISKLADNPIKRKAISSKMSMMFQHCALFSSLTNLQNVIFPLRQHTKLPIDIL EEEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH TDIAIIKLKMVGLKEEAFNKYPSEISGGMLKRVALARTIALDPKVVFLDEPNAGLDPYSA HHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHH RAMDDLILYLKEELKMSVVMITHDLSTIWHIVDDIIYMDEKRIMLHDSVEFVSQQTQYES HHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHH IRKFFDSHNDGKY HHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]