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The map label for this gene is yeaM [H]

Identifier: 89256078

GI number: 89256078

Start: 676723

End: 677550

Strand: Direct

Name: yeaM [H]

Synonym: FTL_0689

Alternate gene names: 89256078

Gene position: 676723-677550 (Clockwise)

Preceding gene: 89256072

Following gene: 89256082

Centisome position: 35.69

GC content: 37.2

Gene sequence:

>828_bases
ATGATACGGGAAGAGATCACATATCTCAGTGATTGGCTTGATGGACCAGAAATAATTGCTATAAAAGGTGGAAATGCTCC
AACTAGTGAAAATAAGATAAATAACCAAGAATCAGATTGGCACCATCATCGTCGTGGTAAAATATTTTGTATTGAATCAG
GTCTTGTTCATGTTAGTACCCCTAATGGCTCATGGGTGTTGCCATCAAATAGGGCTGGATGGATACCACCAAATACATCA
CATAAAATTCGTATAAGTGGTATTGTAGAAGGCTGGGTTATTTTTATTCATCCAAATATGTGCGATGATTTGCCTAAGAG
CTCAAGAGTTATTCCAATGAGTGAAGTATTAAGAGCACTTGCTTTAAGGGCAACAGAATGGGATAAATACAATAATTTAA
GCTTAGAGCAAGAGCATATTGCTAAGATTATTTGTAATGAGATTAGGCTCGCTCCAGAAGAGGCTCTACATTTGCCGATG
CCAAAAACAGATAGAGTCATTAAAGTTGCTAATGCAATTATTGATAATCCATCGATAAGCAAAAGTTTAGAACAATGGGC
AGCATTTGCCGCTATGTCGCCACGGACATTACGCCGAGCTTTTTTATCCGAAACAGGACTTAGTTTTTCACGTTGGCGAC
AACAGGCACAACTTGCACGTGGTTTAGATATGTTAGCCAAAGATATTTCTGTTACTGAGGTTTCAGATTCATTGGGATAT
GCTTCACCAAGTAATTTTATAGCAATGTTTCGCAAGGCATTTGGTAAAACACCAAAACAGTATTTCTCTAGTGAAAGAGT
ACAGATAAAAAATATTTATAAGAACTGA

Upstream 100 bases:

>100_bases
AAATTACTTAATGAGTTTATTTTTGCGTAAAATTATTGCACAATTTTGATAATGTATTATAGCATTATATGGACAATAAA
TGGTGAAAAAAGGACAAAGT

Downstream 100 bases:

>100_bases
TTTTTTAGTTTCTTAATATCTATTTTACTAGTATTATTTTTTGGTAGAGTTTCTACAAATATACATGATCTAGGGACTTT
ATAGCTTGCTAATTTATCTT

Product: transcriptional regulator araC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MIREEITYLSDWLDGPEIIAIKGGNAPTSENKINNQESDWHHHRRGKIFCIESGLVHVSTPNGSWVLPSNRAGWIPPNTS
HKIRISGIVEGWVIFIHPNMCDDLPKSSRVIPMSEVLRALALRATEWDKYNNLSLEQEHIAKIICNEIRLAPEEALHLPM
PKTDRVIKVANAIIDNPSISKSLEQWAAFAAMSPRTLRRAFLSETGLSFSRWRQQAQLARGLDMLAKDISVTEVSDSLGY
ASPSNFIAMFRKAFGKTPKQYFSSERVQIKNIYKN

Sequences:

>Translated_275_residues
MIREEITYLSDWLDGPEIIAIKGGNAPTSENKINNQESDWHHHRRGKIFCIESGLVHVSTPNGSWVLPSNRAGWIPPNTS
HKIRISGIVEGWVIFIHPNMCDDLPKSSRVIPMSEVLRALALRATEWDKYNNLSLEQEHIAKIICNEIRLAPEEALHLPM
PKTDRVIKVANAIIDNPSISKSLEQWAAFAAMSPRTLRRAFLSETGLSFSRWRQQAQLARGLDMLAKDISVTEVSDSLGY
ASPSNFIAMFRKAFGKTPKQYFSSERVQIKNIYKN
>Mature_275_residues
MIREEITYLSDWLDGPEIIAIKGGNAPTSENKINNQESDWHHHRRGKIFCIESGLVHVSTPNGSWVLPSNRAGWIPPNTS
HKIRISGIVEGWVIFIHPNMCDDLPKSSRVIPMSEVLRALALRATEWDKYNNLSLEQEHIAKIICNEIRLAPEEALHLPM
PKTDRVIKVANAIIDNPSISKSLEQWAAFAAMSPRTLRRAFLSETGLSFSRWRQQAQLARGLDMLAKDISVTEVSDSLGY
ASPSNFIAMFRKAFGKTPKQYFSSERVQIKNIYKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=226, Percent_Identity=31.4159292035398, Blast_Score=117, Evalue=7e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31119; Mature: 31119

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIREEITYLSDWLDGPEIIAIKGGNAPTSENKINNQESDWHHHRRGKIFCIESGLVHVST
CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHCCCEEEEEECCEEEEEC
PNGSWVLPSNRAGWIPPNTSHKIRISGIVEGWVIFIHPNMCDDLPKSSRVIPMSEVLRAL
CCCCEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCHHCCCCCCCCCCCHHHHHHHH
ALRATEWDKYNNLSLEQEHIAKIICNEIRLAPEEALHLPMPKTDRVIKVANAIIDNPSIS
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCHHH
KSLEQWAAFAAMSPRTLRRAFLSETGLSFSRWRQQAQLARGLDMLAKDISVTEVSDSLGY
HHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCC
ASPSNFIAMFRKAFGKTPKQYFSSERVQIKNIYKN
CCCHHHHHHHHHHHCCCHHHHHCCCCEEEHHHCCC
>Mature Secondary Structure
MIREEITYLSDWLDGPEIIAIKGGNAPTSENKINNQESDWHHHRRGKIFCIESGLVHVST
CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHCCCEEEEEECCEEEEEC
PNGSWVLPSNRAGWIPPNTSHKIRISGIVEGWVIFIHPNMCDDLPKSSRVIPMSEVLRAL
CCCCEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCHHCCCCCCCCCCCHHHHHHHH
ALRATEWDKYNNLSLEQEHIAKIICNEIRLAPEEALHLPMPKTDRVIKVANAIIDNPSIS
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCHHH
KSLEQWAAFAAMSPRTLRRAFLSETGLSFSRWRQQAQLARGLDMLAKDISVTEVSDSLGY
HHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCC
ASPSNFIAMFRKAFGKTPKQYFSSERVQIKNIYKN
CCCHHHHHHHHHHHCCCHHHHHCCCCEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]