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The map label for this gene is rarA [H]

Identifier: 89256012

GI number: 89256012

Start: 605084

End: 605986

Strand: Direct

Name: rarA [H]

Synonym: FTL_0615

Alternate gene names: 89256012

Gene position: 605084-605986 (Clockwise)

Preceding gene: 89256010

Following gene: 89256013

Centisome position: 31.91

GC content: 35.55

Gene sequence:

>903_bases
TTGCCATATGTTGAGTCAGGTAAAATTATTTTAATTGGTGCTACTACTGAGAATACAACATATTACTTGAACGATGCTTT
AGTTTCGCGATTGTTTATTTTGCGTCTTAAAAGATTAAGTTTAGTAGCTACTCAAAAACTTATCGAAAAAGCATTATCAC
AAGATGAAGTGCTAGCGAAACATAAATTCAAAATTGATGATGGCTTATATAATGCTATGCATAATTATAATGAAGGAGAT
TGTCGCAAAATCCTCAATCTGCTTGAGAGAATGTTTTTAATTAGTACTAGAGGCGATGAAATTTATCTAAACAAAGAGCT
TTTTGATCAAGCTGTTGGAGAGACTTCGCGAGATTTTCATCGTGAGGGTAAGGAGTTTTATGAGCAGTTATCAGCTTTTC
ACAAGTCGGTACGCGGGACAGATCCTGATGCGGCAATCTTTTGGTTAAGTGTGATGTTAGATAATGGGGTTGATCCATTA
GTTATTGCTAGAAGAATGCTATGTATTGCCTCAGAGGATATTGGTAATGCTGATCCACAAGCACTAAGAGTAGCTATGGA
TGCTTGGAATGCTTATGAAAAATTAGGCATGCTAGAGGGGAGGCTAGTATTAGCACAAGCAGCTATTTATCTAGCAGTAG
CGCCAAAGAGTAATGCTTGTTATAAAGCGTTGGCACAAGCTCAGCAGCTCGTTAAAAGCTTAGGTAATATCGATGTTCCA
CAGCACCTTAAGAATTATAAGAATAGTAATTATCTTTATCCACATAACTATCCAAACTCATATGTTATCCAGCAATATCT
TCCAGATAATATCATACAAAATTTTTATCAGCCTACAGCAAGTGGTTTTGAAGCAAAGATAAAAACCAAGCTTGACAGTA
TAAACAAAATCAAGAAGTTGTAA

Upstream 100 bases:

>100_bases
AGATATCAAAAAGTTAATTACAGATAATCAGCATCTAGATAGTTTTGTATTATTTTTAGATGAGATTCATCGCTTTAATA
AATCTTAACAAGATATACTT

Downstream 100 bases:

>100_bases
AATTAAGTTATTAAATTTTTGTATTTGTATGTTATAATCTTTGGAATTAAATTATATCTATAAAATATAACTAGGTTTTA
AACTGCTATGGCATTAGAAA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MPYVESGKIILIGATTENTTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGD
CRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPL
VIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMLEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNIDVP
QHLKNYKNSNYLYPHNYPNSYVIQQYLPDNIIQNFYQPTASGFEAKIKTKLDSINKIKKL

Sequences:

>Translated_300_residues
MPYVESGKIILIGATTENTTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGD
CRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPL
VIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMLEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNIDVP
QHLKNYKNSNYLYPHNYPNSYVIQQYLPDNIIQNFYQPTASGFEAKIKTKLDSINKIKKL
>Mature_299_residues
PYVESGKIILIGATTENTTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDC
RKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLV
IARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMLEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNIDVPQ
HLKNYKNSNYLYPHNYPNSYVIQQYLPDNIIQNFYQPTASGFEAKIKTKLDSINKIKKL

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=313, Percent_Identity=32.2683706070287, Blast_Score=143, Evalue=2e-34,
Organism=Homo sapiens, GI18426904, Length=296, Percent_Identity=30.0675675675676, Blast_Score=115, Evalue=3e-26,
Organism=Escherichia coli, GI1787119, Length=305, Percent_Identity=39.672131147541, Blast_Score=213, Evalue=9e-57,
Organism=Saccharomyces cerevisiae, GI6324111, Length=300, Percent_Identity=34.3333333333333, Blast_Score=157, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 34094; Mature: 33962

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYVESGKIILIGATTENTTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAK
CCCCCCCCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
HKFKIDDGLYNAMHNYNEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFH
HCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHCCCHHHHH
REGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHH
ALRVAMDAWNAYEKLGMLEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNIDVP
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCCCH
QHLKNYKNSNYLYPHNYPNSYVIQQYLPDNIIQNFYQPTASGFEAKIKTKLDSINKIKKL
HHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PYVESGKIILIGATTENTTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAK
CCCCCCCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH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PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]