Click here to switch to the map view.

The map label for this gene is arcB [H]

Identifier: 89255976

GI number: 89255976

Start: 556334

End: 557182

Strand: Direct

Name: arcB [H]

Synonym: FTL_0578

Alternate gene names: 89255976

Gene position: 556334-557182 (Clockwise)

Preceding gene: 89255975

Following gene: 89255977

Centisome position: 29.34

GC content: 35.22

Gene sequence:

>849_bases
ATGCCGACAGCAGATAAGGAACTATTTACCTATAAGTATGTAAATGGTCATCCAGGAAATCCAAAATATGGTAAACAAAC
AGTAATTGCTACAGGTCAGTTAAGTGAAATTAAGCATGGTTATCCGTTATTAATATCTGAGATGACCATTCTTACTGCAT
TAAGAACAGCTGCTGCAACTATTTTAGCAACTGATTATCTAGCGCGTAAAGACAGTAAAACTATGGCATTAATAGGTACA
GGTGCCCAAAGCGAATTTCAGACTTTAGCACATAAGTTAATTAGACCTATACAGACAGTTAGATATTTTGATACAGATCC
ACAAGCTATGAAAAAATATGCTAACAATATGAAAGATGTCGATCTTGAGTTTATAGCTTGTGATAGTGCTAAAGAGGCTT
GTGAGGGTGCTGATATTATTGTTGTATGTACTGCTTGTAAGCTTCACGCAATTGTTATTGAAAATGACTGGATCAAAGAA
GGTGTTCATATCAGTGGCTTAGGAGTTGATTGCCCTGGTAAAACCGAGCTTGATATGGATATTCTTTTTAGAGGTAAGGT
TGTAGTTGAGTATAAAGAGCAGTCAATGATTGAGGGCGAAATTCAAAATTTATCTCCACAACAAGTAGAACAGGTACTTC
ATGTAGAGGTTTGGGAAATCTTAACAGGTAACAAGAAGGGTCGTGAGAATGATAAAGAAATCACAATTTATGATTCAGTT
GGTTTTGCAATTGAAGATTTCTCAGCTTTACGTTTAACTTTAGATCTGGCTGAAAAATATGATATTGGCAGTCAGATGGA
TATGGTTCCACCGATAAAAGATCCTAAAAACTTATTTTCAGTTCTTTAA

Upstream 100 bases:

>100_bases
CAGATCTTGTTGAGTATACAAAACAAGACTTTATTCGTGGAGTGAATTTGATAAATCGCCACGATATGCAGCACATGTAC
CAGGTGGTGTGTTAGAACTT

Downstream 100 bases:

>100_bases
TCTATATTTATTATTTTATTATCAGCTTATATAAGTTTATAATTTCTATTATTTACTAGTAAATTTTACTATGAGTTTTG
ATAACCTGCTTCTAATGACA

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD [H]

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MPTADKELFTYKYVNGHPGNPKYGKQTVIATGQLSEIKHGYPLLISEMTILTALRTAAATILATDYLARKDSKTMALIGT
GAQSEFQTLAHKLIRPIQTVRYFDTDPQAMKKYANNMKDVDLEFIACDSAKEACEGADIIVVCTACKLHAIVIENDWIKE
GVHISGLGVDCPGKTELDMDILFRGKVVVEYKEQSMIEGEIQNLSPQQVEQVLHVEVWEILTGNKKGRENDKEITIYDSV
GFAIEDFSALRLTLDLAEKYDIGSQMDMVPPIKDPKNLFSVL

Sequences:

>Translated_282_residues
MPTADKELFTYKYVNGHPGNPKYGKQTVIATGQLSEIKHGYPLLISEMTILTALRTAAATILATDYLARKDSKTMALIGT
GAQSEFQTLAHKLIRPIQTVRYFDTDPQAMKKYANNMKDVDLEFIACDSAKEACEGADIIVVCTACKLHAIVIENDWIKE
GVHISGLGVDCPGKTELDMDILFRGKVVVEYKEQSMIEGEIQNLSPQQVEQVLHVEVWEILTGNKKGRENDKEITIYDSV
GFAIEDFSALRLTLDLAEKYDIGSQMDMVPPIKDPKNLFSVL
>Mature_281_residues
PTADKELFTYKYVNGHPGNPKYGKQTVIATGQLSEIKHGYPLLISEMTILTALRTAAATILATDYLARKDSKTMALIGTG
AQSEFQTLAHKLIRPIQTVRYFDTDPQAMKKYANNMKDVDLEFIACDSAKEACEGADIIVVCTACKLHAIVIENDWIKEG
VHISGLGVDCPGKTELDMDILFRGKVVVEYKEQSMIEGEIQNLSPQQVEQVLHVEVWEILTGNKKGRENDKEITIYDSVG
FAIEDFSALRLTLDLAEKYDIGSQMDMVPPIKDPKNLFSVL

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=228, Percent_Identity=27.1929824561404, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI62241008, Length=228, Percent_Identity=27.1929824561404, Blast_Score=85, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 31391; Mature: 31260

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTADKELFTYKYVNGHPGNPKYGKQTVIATGQLSEIKHGYPLLISEMTILTALRTAAAT
CCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHH
ILATDYLARKDSKTMALIGTGAQSEFQTLAHKLIRPIQTVRYFDTDPQAMKKYANNMKDV
HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC
DLEFIACDSAKEACEGADIIVVCTACKLHAIVIENDWIKEGVHISGLGVDCPGKTELDMD
CEEEEEECCHHHHHCCCCEEEEEECCEEEEEEEECCHHHCCCEEEEECCCCCCCCCCCEE
ILFRGKVVVEYKEQSMIEGEIQNLSPQQVEQVLHVEVWEILTGNKKGRENDKEITIYDSV
EEEECEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECC
GFAIEDFSALRLTLDLAEKYDIGSQMDMVPPIKDPKNLFSVL
CCEECCCCEEEEEEEHHHHCCCCCCCCCCCCCCCHHHHHHCC
>Mature Secondary Structure 
PTADKELFTYKYVNGHPGNPKYGKQTVIATGQLSEIKHGYPLLISEMTILTALRTAAAT
CCCCCCEEEEEEECCCCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHH
ILATDYLARKDSKTMALIGTGAQSEFQTLAHKLIRPIQTVRYFDTDPQAMKKYANNMKDV
HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC
DLEFIACDSAKEACEGADIIVVCTACKLHAIVIENDWIKEGVHISGLGVDCPGKTELDMD
CEEEEEECCHHHHHCCCCEEEEEECCEEEEEEEECCHHHCCCEEEEECCCCCCCCCCCEE
ILFRGKVVVEYKEQSMIEGEIQNLSPQQVEQVLHVEVWEILTGNKKGRENDKEITIYDSV
EEEECEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECC
GFAIEDFSALRLTLDLAEKYDIGSQMDMVPPIKDPKNLFSVL
CCEECCCCEEEEEEEHHHHCCCCCCCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3281832; 8045881; 11743193; 11743194 [H]