Click here to switch to the map view.

The map label for this gene is cspC [H]

Identifier: 89255867

GI number: 89255867

Start: 432354

End: 432557

Strand: Reverse

Name: cspC [H]

Synonym: FTL_0457

Alternate gene names: 89255867

Gene position: 432557-432354 (Counterclockwise)

Preceding gene: 89255868

Following gene: 89255866

Centisome position: 22.81

GC content: 31.86

Gene sequence:

>204_bases
ATGAATAATAAATCACAAGGTACAGTAAAATTTTTCAATGAGCAAAAAGGATTTGGTTTCATTACGCCTGAAAATGGTGG
AAAAGATGTATTTGTACACATATCAAAATTAAATGGTGAAACACTAGCTGAAGGTCAGCAAGTTACTTTTGAAACTCAAG
AAGGTAGAAAAGGTCCTGAAGCTATCAATATTGAGGTACTATAA

Upstream 100 bases:

>100_bases
CAGTTTTTGCTTAATCTCTTAAATTGTCATTTGATAATTCCATACACCAATAACTAGCTTTAATAGCTAAAAACTAAGTA
AAAAACAAAAGAGAATAAAA

Downstream 100 bases:

>100_bases
TGCTAAGTATTAGAGTAGATGAGCACAAACCATTTGATATAAGTTTAAGAAACTTCAAACGTGCTTGCGAAAAAGCTGGT
ATCAAGCAAGAGCTTAGAGA

Product: cold shock protein

Products: NA

Alternate protein names: CSP-C [H]

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MNNKSQGTVKFFNEQKGFGFITPENGGKDVFVHISKLNGETLAEGQQVTFETQEGRKGPEAINIEVL

Sequences:

>Translated_67_residues
MNNKSQGTVKFFNEQKGFGFITPENGGKDVFVHISKLNGETLAEGQQVTFETQEGRKGPEAINIEVL
>Mature_67_residues
MNNKSQGTVKFFNEQKGFGFITPENGGKDVFVHISKLNGETLAEGQQVTFETQEGRKGPEAINIEVL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=59.7014925373134, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=61.7647058823529, Blast_Score=79, Evalue=6e-17,
Organism=Escherichia coli, GI1787839, Length=69, Percent_Identity=55.0724637681159, Blast_Score=77, Evalue=1e-16,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=51.4285714285714, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=50, Blast_Score=73, Evalue=3e-15,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=51.4285714285714, Blast_Score=73, Evalue=4e-15,
Organism=Escherichia coli, GI1787107, Length=59, Percent_Identity=50.8474576271186, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7385; Mature: 7385

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKSQGTVKFFNEQKGFGFITPENGGKDVFVHISKLNGETLAEGQQVTFETQEGRKGPE
CCCCCCCEEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCCCC
AINIEVL
EEEEEEC
>Mature Secondary Structure
MNNKSQGTVKFFNEQKGFGFITPENGGKDVFVHISKLNGETLAEGQQVTFETQEGRKGPE
CCCCCCCEEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCCCC
AINIEVL
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12384590; 12704152 [H]