Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89054619
Identifier: 89054619
GI number: 89054619
Start: 2137054
End: 2137428
Strand: Reverse
Name: 89054619
Synonym: Jann_2128
Alternate gene names: NA
Gene position: 2137428-2137054 (Counterclockwise)
Preceding gene: 89054620
Following gene: 89054618
Centisome position: 49.5
GC content: 67.2
Gene sequence:
>375_bases ATGTCGCTGCGCCGCCCGCCCGTCAAACAGGTCCGCGAACCTACGATTGCGCTCATCAACGTGGTCTTCCTGATGCTGAT CTTCTTTCTCATCGCGGGCTCCGTCGCGCCGCCGCTGGACCCGCGCGTGGCCCTTGTGGACACGACCGAGTTGGAAGGCC GCGCCCCGCCAGACGCCGCCGTGATCCTGCCCGATGGCACGCTTGAGATGCACGGAGAGGCCATTTCCCTGACCCAGATC ATCGCCGACGATTCAACGCCGCGCCTTGTGCCGGACCGCGCCCTGCCCGCCGCTGATCTGGTCGCCATCTCCCGCGCCCT GCGCGAGGCGGGTGCGGAAGAGGTCTGGATCGTGACCGAACGGGGCATGGAATGA
Upstream 100 bases:
>100_bases GTCAGTGCCGCCGATGATGTGACGTCTCAGCGCCTGGTCGATCTGCTGGTGGCCTTGGCTTCCGTGCCGGACCTGTCCGT CACCGTGCTGGACTAGCCCC
Downstream 100 bases:
>100_bases AGGGCGCACGTGCCGTCGGCGTGGTGGCTGCTGTTGCGCTGTCAGGCGGAGTCCACCTGGCCGGGGCCGGATATTTCGCG CCCGATGTGGTCGAGTTGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 124; Mature: 123
Protein sequence:
>124_residues MSLRRPPVKQVREPTIALINVVFLMLIFFLIAGSVAPPLDPRVALVDTTELEGRAPPDAAVILPDGTLEMHGEAISLTQI IADDSTPRLVPDRALPAADLVAISRALREAGAEEVWIVTERGME
Sequences:
>Translated_124_residues MSLRRPPVKQVREPTIALINVVFLMLIFFLIAGSVAPPLDPRVALVDTTELEGRAPPDAAVILPDGTLEMHGEAISLTQI IADDSTPRLVPDRALPAADLVAISRALREAGAEEVWIVTERGME >Mature_123_residues SLRRPPVKQVREPTIALINVVFLMLIFFLIAGSVAPPLDPRVALVDTTELEGRAPPDAAVILPDGTLEMHGEAISLTQII ADDSTPRLVPDRALPAADLVAISRALREAGAEEVWIVTERGME
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13387; Mature: 13256
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRRPPVKQVREPTIALINVVFLMLIFFLIAGSVAPPLDPRVALVDTTELEGRAPPDAA CCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCE VILPDGTLEMHGEAISLTQIIADDSTPRLVPDRALPAADLVAISRALREAGAEEVWIVTE EEECCCCEEECCCEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC RGME CCCC >Mature Secondary Structure SLRRPPVKQVREPTIALINVVFLMLIFFLIAGSVAPPLDPRVALVDTTELEGRAPPDAA CCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCE VILPDGTLEMHGEAISLTQIIADDSTPRLVPDRALPAADLVAISRALREAGAEEVWIVTE EEECCCCEEECCCEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC RGME CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA