Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89054506
Identifier: 89054506
GI number: 89054506
Start: 2020827
End: 2021444
Strand: Reverse
Name: 89054506
Synonym: Jann_2015
Alternate gene names: NA
Gene position: 2021444-2020827 (Counterclockwise)
Preceding gene: 89054510
Following gene: 89054505
Centisome position: 46.81
GC content: 62.94
Gene sequence:
>618_bases ATGACCGACCAGAATGACAGCAACAAAAAGTGGTACAAAACAGGCCGTGGTCGTCTGTTTGCAGGCATAGCTGCGGCTGC CTGCATCGTGCTTGGGGCGCAGGCCATTGCGCAGACTCGTCCGGCGCAGCACCTTGCCCAGTTCGTTTCCGATGGCGGTA CGCCGGAGTTCATGGAGGCGCAGTTTCGGCCCGGCCATGGCCACGGGTTCGGACCGGGGCGCGGCAGTCCGTTCGAGGAC ATGAGCGAGGAAGAAATCGACCGCATGGTCGCGCGGGGCGTCGCCCACGCCGCGATTGAGTTGGGCGCAACAGATGCGCA ACGCGACCAGATCACCGAGATTGTCGTGGCGCTTGTGCAGGAAATGCGACCGCTCGCCGATGGGTTCCGTGAAGCGGCGA CGGAACTGCAAAGCCTTCTCCTGGCTGAAGACGTTGACGCCGAAGCGCTTGAGGCGATCCGCGCAGAACGTCTTGCGGAG GCCGACCGTGTCAGCCGTGAGATGGTGACGGCCCTGACAGAGATTGCGGGTATTCTGACCGCCGAGCAGCGCCAAACAGC GGCCGAGCGGATAGAATTCTTCCGCGAAATGCGCGAACGTCGCCGCGGTGAAGACTGA
Upstream 100 bases:
>100_bases ATGCTACCGACTTCACAGAACTTTACGTTCACGACAAACGTCAGCAACACCGCGCGCATAGGTCTGGGTCATCGAAACTT ACCAGCCATGGGGCGAACTG
Downstream 100 bases:
>100_bases CCCTCGCTGCAAGGAGACCCGATGACAGACGCCATACTGCTGGTCGAAGATGACACACGCCTCGCCGAGATGGTCGCAAG CTATCTCGGCGGGAACGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 205; Mature: 204
Protein sequence:
>205_residues MTDQNDSNKKWYKTGRGRLFAGIAAAACIVLGAQAIAQTRPAQHLAQFVSDGGTPEFMEAQFRPGHGHGFGPGRGSPFED MSEEEIDRMVARGVAHAAIELGATDAQRDQITEIVVALVQEMRPLADGFREAATELQSLLLAEDVDAEALEAIRAERLAE ADRVSREMVTALTEIAGILTAEQRQTAAERIEFFREMRERRRGED
Sequences:
>Translated_205_residues MTDQNDSNKKWYKTGRGRLFAGIAAAACIVLGAQAIAQTRPAQHLAQFVSDGGTPEFMEAQFRPGHGHGFGPGRGSPFED MSEEEIDRMVARGVAHAAIELGATDAQRDQITEIVVALVQEMRPLADGFREAATELQSLLLAEDVDAEALEAIRAERLAE ADRVSREMVTALTEIAGILTAEQRQTAAERIEFFREMRERRRGED >Mature_204_residues TDQNDSNKKWYKTGRGRLFAGIAAAACIVLGAQAIAQTRPAQHLAQFVSDGGTPEFMEAQFRPGHGHGFGPGRGSPFEDM SEEEIDRMVARGVAHAAIELGATDAQRDQITEIVVALVQEMRPLADGFREAATELQSLLLAEDVDAEALEAIRAERLAEA DRVSREMVTALTEIAGILTAEQRQTAAERIEFFREMRERRRGED
Specific function: Unknown
COG id: COG3678
COG function: function code UNTP; P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22526; Mature: 22394
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDQNDSNKKWYKTGRGRLFAGIAAAACIVLGAQAIAQTRPAQHLAQFVSDGGTPEFMEA CCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHH QFRPGHGHGFGPGRGSPFEDMSEEEIDRMVARGVAHAAIELGATDAQRDQITEIVVALVQ CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH EMRPLADGFREAATELQSLLLAEDVDAEALEAIRAERLAEADRVSREMVTALTEIAGILT HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEQRQTAAERIEFFREMRERRRGED HHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TDQNDSNKKWYKTGRGRLFAGIAAAACIVLGAQAIAQTRPAQHLAQFVSDGGTPEFMEA CCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHH QFRPGHGHGFGPGRGSPFEDMSEEEIDRMVARGVAHAAIELGATDAQRDQITEIVVALVQ CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH EMRPLADGFREAATELQSLLLAEDVDAEALEAIRAERLAEADRVSREMVTALTEIAGILT HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEQRQTAAERIEFFREMRERRRGED HHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA