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The map label for this gene is ybdK [C]

Identifier: 89054402

GI number: 89054402

Start: 1899487

End: 1900623

Strand: Reverse

Name: ybdK [C]

Synonym: Jann_1911

Alternate gene names: 89054402

Gene position: 1900623-1899487 (Counterclockwise)

Preceding gene: 89054404

Following gene: 89054401

Centisome position: 44.02

GC content: 62.53

Gene sequence:

>1137_bases
ATGGCGCAGACGTTCTCGGATGAGCACTTCACCCTTGGGATCGAGGAGGAGTACCTGCTCGTCGACGCCGAGACCTATGA
TCTGGCGGAGGCTCCCGATGCGCTTATGGCGGCCTGCGCGGACAAACTGTCATCGAAGGTGAGCCCTGAATTCCTGCAAT
GCCAGATCGAAGTGGGCACCGGGGTTTGCGCCAGTATCGCCGACGCGCGTGCAGATTTGCGCAATTTGCGTGCCACGGTC
GCGGAATGTGCGGGACGCTTTGGCCTCGCGCCCATCGCGGTGTCCTGCCACCCCTTCGCCGATTGGAAGGATCAAAGCCA
CACGGACAAGGACCGCTACAACCAGCTTGCCCGCGACCTGGGCGGTGTGGTGGAGCGGATGCTGATCTGCGGCGCCCATT
GCCATGTGGGCCTGCCATCCGAGAATGACCGCGTCGATATCATGCGGCAGATGACCTATTTCCTGCCGCACCTGCTGGCG
CTGTCCACGTCCTCTCCGTTCTGGCAGGGGCGCGATACGGGGTTGGCGTCCTACCGTCTGACGGTCTTTGACAACCTGCC
GCGCACGGGCCTGCCGCCGTCATTTGCGTCCTTTGACGAGTTCCAGCGCACCGTTGATCTGCTGGTCGATATGGAGATGA
TCGAGGACAGCTCGAAGATCTGGTGGGATCTGCGCCCCTCCGCGGCCTTCCCCACGCTGGAGACGCGGATCTGCGATGTC
TCTCCCCGGCTGGAAGATCAGCTGTCGCTCAGCGCGCTGATCCAATGCCTGACGCGGATGCTAATGCGTCTGCGTGGATC
GAACCAGCGCTGGCGGGTCTATGATCGGTTCCTGATCAATGAAAATCGATGGCGTGCGCAGCGATACGGGGTCAGCGACG
GGCTGATTGACTTCGGGCGCGGCGCGGTGGTGCCGTTACCGGAACTGGTGGACGAGTTGATCGAGTTGACCGAACAGGAT
GCGGAGGCGTTGGGCTGTGTGGACGAGGTGCAGCGCCTGCGCGATCTTGCCGTCGAGACCAGTTCAGATCGGCAACGTAA
GATCTACAAGGGCACCCGCGCGGCAGGCGGGTCCCACCAAGCCGCCATGCGCAGCGTGGTGGAGCATCTGTTGGAGGACT
TCCATGTCGACCTCTGA

Upstream 100 bases:

>100_bases
CGGAAAACCCTACCGGCATGGCGCGATCAGATCCGCGCGCCTGTTTCCCTTGCCAAATCCTGTCTCCCCGGCCCAAGCTG
AGGCCATAAGGGAGAGAGAC

Downstream 100 bases:

>100_bases
CCCCAAAACGAGACCGTGCTGATGTACCGAGCCGCCGCCGTCGTGATCGCCGTGATTGCGGCGGTGCACCTATATATCGC
CTGGTTTGAAATCTTCGCCT

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MAQTFSDEHFTLGIEEEYLLVDAETYDLAEAPDALMAACADKLSSKVSPEFLQCQIEVGTGVCASIADARADLRNLRATV
AECAGRFGLAPIAVSCHPFADWKDQSHTDKDRYNQLARDLGGVVERMLICGAHCHVGLPSENDRVDIMRQMTYFLPHLLA
LSTSSPFWQGRDTGLASYRLTVFDNLPRTGLPPSFASFDEFQRTVDLLVDMEMIEDSSKIWWDLRPSAAFPTLETRICDV
SPRLEDQLSLSALIQCLTRMLMRLRGSNQRWRVYDRFLINENRWRAQRYGVSDGLIDFGRGAVVPLPELVDELIELTEQD
AEALGCVDEVQRLRDLAVETSSDRQRKIYKGTRAAGGSHQAAMRSVVEHLLEDFHVDL

Sequences:

>Translated_378_residues
MAQTFSDEHFTLGIEEEYLLVDAETYDLAEAPDALMAACADKLSSKVSPEFLQCQIEVGTGVCASIADARADLRNLRATV
AECAGRFGLAPIAVSCHPFADWKDQSHTDKDRYNQLARDLGGVVERMLICGAHCHVGLPSENDRVDIMRQMTYFLPHLLA
LSTSSPFWQGRDTGLASYRLTVFDNLPRTGLPPSFASFDEFQRTVDLLVDMEMIEDSSKIWWDLRPSAAFPTLETRICDV
SPRLEDQLSLSALIQCLTRMLMRLRGSNQRWRVYDRFLINENRWRAQRYGVSDGLIDFGRGAVVPLPELVDELIELTEQD
AEALGCVDEVQRLRDLAVETSSDRQRKIYKGTRAAGGSHQAAMRSVVEHLLEDFHVDL
>Mature_377_residues
AQTFSDEHFTLGIEEEYLLVDAETYDLAEAPDALMAACADKLSSKVSPEFLQCQIEVGTGVCASIADARADLRNLRATVA
ECAGRFGLAPIAVSCHPFADWKDQSHTDKDRYNQLARDLGGVVERMLICGAHCHVGLPSENDRVDIMRQMTYFLPHLLAL
STSSPFWQGRDTGLASYRLTVFDNLPRTGLPPSFASFDEFQRTVDLLVDMEMIEDSSKIWWDLRPSAAFPTLETRICDVS
PRLEDQLSLSALIQCLTRMLMRLRGSNQRWRVYDRFLINENRWRAQRYGVSDGLIDFGRGAVVPLPELVDELIELTEQDA
EALGCVDEVQRLRDLAVETSSDRQRKIYKGTRAAGGSHQAAMRSVVEHLLEDFHVDL

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=352, Percent_Identity=29.5454545454545, Blast_Score=169, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_JANSC (Q28R34)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_509853.1
- ProteinModelPortal:   Q28R34
- SMR:   Q28R34
- STRING:   Q28R34
- GeneID:   3934362
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_1911
- eggNOG:   COG2170
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- PhylomeDB:   Q28R34
- ProtClustDB:   PRK13515
- BioCyc:   JSP290400:JANN_1911-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 42507; Mature: 42375

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQTFSDEHFTLGIEEEYLLVDAETYDLAEAPDALMAACADKLSSKVSPEFLQCQIEVGT
CCCCCCCCCEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCC
GVCASIADARADLRNLRATVAECAGRFGLAPIAVSCHPFADWKDQSHTDKDRYNQLARDL
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
GGVVERMLICGAHCHVGLPSENDRVDIMRQMTYFLPHLLALSTSSPFWQGRDTGLASYRL
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
TVFDNLPRTGLPPSFASFDEFQRTVDLLVDMEMIEDSSKIWWDLRPSAAFPTLETRICDV
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCC
SPRLEDQLSLSALIQCLTRMLMRLRGSNQRWRVYDRFLINENRWRAQRYGVSDGLIDFGR
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCHHHHHHCCCCCCCHHCCC
GAVVPLPELVDELIELTEQDAEALGCVDEVQRLRDLAVETSSDRQRKIYKGTRAAGGSHQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHH
AAMRSVVEHLLEDFHVDL
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AQTFSDEHFTLGIEEEYLLVDAETYDLAEAPDALMAACADKLSSKVSPEFLQCQIEVGT
CCCCCCCCEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCC
GVCASIADARADLRNLRATVAECAGRFGLAPIAVSCHPFADWKDQSHTDKDRYNQLARDL
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
GGVVERMLICGAHCHVGLPSENDRVDIMRQMTYFLPHLLALSTSSPFWQGRDTGLASYRL
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
TVFDNLPRTGLPPSFASFDEFQRTVDLLVDMEMIEDSSKIWWDLRPSAAFPTLETRICDV
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCC
SPRLEDQLSLSALIQCLTRMLMRLRGSNQRWRVYDRFLINENRWRAQRYGVSDGLIDFGR
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCHHHHHHCCCCCCCHHCCC
GAVVPLPELVDELIELTEQDAEALGCVDEVQRLRDLAVETSSDRQRKIYKGTRAAGGSHQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHH
AAMRSVVEHLLEDFHVDL
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA