Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
---|---|
Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is sam [H]
Identifier: 89054289
GI number: 89054289
Start: 1787308
End: 1788168
Strand: Reverse
Name: sam [H]
Synonym: Jann_1798
Alternate gene names: 89054289
Gene position: 1788168-1787308 (Counterclockwise)
Preceding gene: 89054290
Following gene: 89054288
Centisome position: 41.41
GC content: 64.46
Gene sequence:
>861_bases ATGGACAACCTCAAAGGCATGGGCTGGATGACGCTGGCGATGCTGGGGTTTGCCCTGGCGGACACCTTCATCAAGCTGAC CCTCGGCGCATTGCCCGTGGGCCAGGTCATCGCCATTTTCGGGTTCGGCGGCGCGTTGATCTTCGGCGGATGGGCCGCGG CCAAGGGCGAGCGTGTCTTTGACGCTGCGCTGTTCACCGGGCCGTTTGTGCTGCGTTTGGGGGCGGAAGTCTTGGGCACG CTGTGCTTCATCATTGCGCTGGCCTCCATCGAATTGTCGCTTCTGTCGGCGATCATTCAGGCCAATCCGCTTCTTGTGAC CCTGGGCGCGGCTTTGTTTCTAGGGGCCAGCGTCGGATGGCGGCGGTGGGTCGCGATCCTGATCGGCCTTTTGGGCGTCC TGATCATCGTGCGTCCGGGCCTGGAGGGGTTTGACGTCAACAGCCTCTGGGCGCTGGGGGCGGCCGTCGGTCTGACCGGG CGCGATCTGGCAACGCGGGCAATTTCACGCGATGTGTCGACGCTGTTGCTAGCGGGATGGGGCTTTGCCGCCGCGGGCAT GGCGGGGCTATTGTTATTGGCCGTTACCGGAGGCGCGACCCTGCCCGGCGGGTTGCTGAGCCTGCAATTGACCGGTGCCT TGATCTTTGCGCTTGTGGCCTATTACGCCGTGACCGCCGCGATGCGCATCGGTGACATCCCCGTTGTCACGCCGTTCCGC TACACGCGGCTGGTCTTCGCCCTGATCCTTGCCTTCTTCGTGTTCGGAGAGCGGCCGGACATGTGGACGCTTGTGGGCGC CGCCATTGTCATTGCGACCGGGCTCTACACCCTCTGGCGAGAGCGGCTGGCGACGACCTGA
Upstream 100 bases:
>100_bases CGGGGGGAGGTGTACCTGCCCAGATGAAGGAGCGGCGGTTTGCGCTGTTGTCCGAGCCTGGATCGGCGTAAGGCCGGGCC TGCACAGCATGGGAGCGGGC
Downstream 100 bases:
>100_bases GCCCGCCTGTTACCGCTAACGGAAATGTTTGCCCCGGATGAAACCTCTGCTATAGCGCCGGCAACCCCATACCTTAGGAG ACCAATCCATGAGCGTTATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 286; Mature: 286
Protein sequence:
>286_residues MDNLKGMGWMTLAMLGFALADTFIKLTLGALPVGQVIAIFGFGGALIFGGWAAAKGERVFDAALFTGPFVLRLGAEVLGT LCFIIALASIELSLLSAIIQANPLLVTLGAALFLGASVGWRRWVAILIGLLGVLIIVRPGLEGFDVNSLWALGAAVGLTG RDLATRAISRDVSTLLLAGWGFAAAGMAGLLLLAVTGGATLPGGLLSLQLTGALIFALVAYYAVTAAMRIGDIPVVTPFR YTRLVFALILAFFVFGERPDMWTLVGAAIVIATGLYTLWRERLATT
Sequences:
>Translated_286_residues MDNLKGMGWMTLAMLGFALADTFIKLTLGALPVGQVIAIFGFGGALIFGGWAAAKGERVFDAALFTGPFVLRLGAEVLGT LCFIIALASIELSLLSAIIQANPLLVTLGAALFLGASVGWRRWVAILIGLLGVLIIVRPGLEGFDVNSLWALGAAVGLTG RDLATRAISRDVSTLLLAGWGFAAAGMAGLLLLAVTGGATLPGGLLSLQLTGALIFALVAYYAVTAAMRIGDIPVVTPFR YTRLVFALILAFFVFGERPDMWTLVGAAIVIATGLYTLWRERLATT >Mature_286_residues MDNLKGMGWMTLAMLGFALADTFIKLTLGALPVGQVIAIFGFGGALIFGGWAAAKGERVFDAALFTGPFVLRLGAEVLGT LCFIIALASIELSLLSAIIQANPLLVTLGAALFLGASVGWRRWVAILIGLLGVLIIVRPGLEGFDVNSLWALGAAVGLTG RDLATRAISRDVSTLLLAGWGFAAAGMAGLLLLAVTGGATLPGGLLSLQLTGALIFALVAYYAVTAAMRIGDIPVVTPFR YTRLVFALILAFFVFGERPDMWTLVGAAIVIATGLYTLWRERLATT
Specific function: Transports S-adenosylmethionine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 29887; Mature: 29887
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNLKGMGWMTLAMLGFALADTFIKLTLGALPVGQVIAIFGFGGALIFGGWAAAKGERVF CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHCCHHHCCCCHHH DAALFTGPFVLRLGAEVLGTLCFIIALASIELSLLSAIIQANPLLVTLGAALFLGASVGW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH RRWVAILIGLLGVLIIVRPGLEGFDVNSLWALGAAVGLTGRDLATRAISRDVSTLLLAGW HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC GFAAAGMAGLLLLAVTGGATLPGGLLSLQLTGALIFALVAYYAVTAAMRIGDIPVVTPFR CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH YTRLVFALILAFFVFGERPDMWTLVGAAIVIATGLYTLWRERLATT HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDNLKGMGWMTLAMLGFALADTFIKLTLGALPVGQVIAIFGFGGALIFGGWAAAKGERVF CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHCCHHHCCCCHHH DAALFTGPFVLRLGAEVLGTLCFIIALASIELSLLSAIIQANPLLVTLGAALFLGASVGW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH RRWVAILIGLLGVLIIVRPGLEGFDVNSLWALGAAVGLTGRDLATRAISRDVSTLLLAGW HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC GFAAAGMAGLLLLAVTGGATLPGGLLSLQLTGALIFALVAYYAVTAAMRIGDIPVVTPFR CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH YTRLVFALILAFFVFGERPDMWTLVGAAIVIATGLYTLWRERLATT HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]