Click here to switch to the map view.

The map label for this gene is 89053827

Identifier: 89053827

GI number: 89053827

Start: 1302260

End: 1303516

Strand: Direct

Name: 89053827

Synonym: Jann_1336

Alternate gene names: NA

Gene position: 1302260-1303516 (Clockwise)

Preceding gene: 89053826

Following gene: 89053828

Centisome position: 30.16

GC content: 63.09

Gene sequence:

>1257_bases
ATGACCATTGAACTTACCCCTCCACCCAAAAAGAACCCGCAGAAACGCTCCACCAGTGCGACCCGTCCGCCAGAGGCGCG
GTCCCGTGCGGCGCTTGGCCTGAGCGCCGCCGCTGCTGAGGGACGCTTTGCGCTTCAGGTCTGTGCGGAATGTCAGGCCG
TGCAATACCCGCCGCGCGATGCCTGCGCGGCGTGCATCGGCACCGATTTGGTCTGGCAAGATATCTCCCCAGATGGCCAC
CTGTTGGCCGAGACGACAATCCAGACCTCCACCAAGCTGTTTTTCCGCGAGCGGGCTCCCTGGCGAATGGGATCGGTCAA
ACTCACGGCGGGGCCCGTTGTTCTGTGTCACGTTCACGGCGATTGCACCCGTGGCGGTCCAGTGAAGATATTGAACCGTT
TGGATAAATCAGGCCAAGCCGTGCTAATCGCAATTCCCCCCGAGAGGACCGAGCATATGGATGATGACCCCCAACTCCGC
GCGATGTCCGCCAACCCCAAGCACCGTCGCATCCTGATCACCGACGCCTGGAACCCAAACACGCCCGCCTTGGCGAAGGC
TCTGTTGGAGGCGGGGGCCGCGACGATCTTTGTGGGTGAAGCAGAAAGCTGGCGGCCCCATCCCAACCGCGACACGCTGG
CGGGGATGGAGAATGTGGACATCCTGCCGCTGGACGTGACCGACACGGCTTCGGTCCAGACACTTGCCGGAGAGATTGGC
GGCAAGACCGACATCCTTATAAACAACGCCCGCTTCATGCGCCCGGGCGGCGTCCTGGCGCGCGGGGACACAGGGTTTGC
CCGTGATGAGATGGAGGTGAATTACCTCGGGCTCATGCGGCTTGCGCAGGCCTTTGGTCCCGGCATGTGCGCGCGAATGG
CAGATGGGGTGAACTCCGCCGCGGCCTGGGTCAACATTCTGTCCGCCCACGCGTTGTCCAATGCGCCGGATTATGGGTGT
TTCTCGGCCTCCAACGCCGCCGCCTACTCCCTCAGCCAATCGTTGCGTGGAGAGTTCCGCAGCGCCGGGCTGCGGGTCAT
GAACGTCTTTGTGGGACCGACGGACGATGATTGGTACGCCCCTTTGCCACCGCCCAAAGTGCTGCCCACAGGCCTGGCAC
GATCTGTCGTGGATGGTCTTCGCGACGGGCTGGAGGACGTCTGGTGCGGTGACATCGCCAAAGACATGCGCGACCGCTGG
CGGCGTGATGCAAAGGTGCTGGAGCGGGAGATGACATTCGGGAGTGAAGGCGCATGA

Upstream 100 bases:

>100_bases
TGGCAGATGCCAGGACGGCGATGGTGTCGGGGTTTGGCATGATCAACTATGACCGCGGGGTCTGTACCAGCGCCTCTATC
CTGAAAACGGGGGGTCGGGC

Downstream 100 bases:

>100_bases
GCAACCTTGAAAGTTTGGCTGCGGACATCACCGCCGGCACCGTGCGCATCGTCGATCTGACCCACACATTGGACCCAGAT
TTTCCGGTTATCATCTTGCC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: Short Chain Dehydrogenase; Oxidoreductase; Short-Chain Dehydrogenase Family Protein; Short Chain Dehydrogenase/Reductase Family Oxidoreductase; Short-Chain Dehydrogenase/Reductase Sdr; Short-Chain Dehydrogenase; Dehydrogenase; 2-Hydroxycyclohexanecarboxyl-CoA Dehydrogenase; Short-Chain Oxidoreductase; Short Chain Dehydrogenase Family Protein; KR Domain Superfamily; Short-Chain Alcohol Dehydrogenase; Short-Chain Dehydrogenase/Reductase; Oxidoreductase Short Chain Dehydrogenase/Reductase Family

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MTIELTPPPKKNPQKRSTSATRPPEARSRAALGLSAAAAEGRFALQVCAECQAVQYPPRDACAACIGTDLVWQDISPDGH
LLAETTIQTSTKLFFRERAPWRMGSVKLTAGPVVLCHVHGDCTRGGPVKILNRLDKSGQAVLIAIPPERTEHMDDDPQLR
AMSANPKHRRILITDAWNPNTPALAKALLEAGAATIFVGEAESWRPHPNRDTLAGMENVDILPLDVTDTASVQTLAGEIG
GKTDILINNARFMRPGGVLARGDTGFARDEMEVNYLGLMRLAQAFGPGMCARMADGVNSAAAWVNILSAHALSNAPDYGC
FSASNAAAYSLSQSLRGEFRSAGLRVMNVFVGPTDDDWYAPLPPPKVLPTGLARSVVDGLRDGLEDVWCGDIAKDMRDRW
RRDAKVLEREMTFGSEGA

Sequences:

>Translated_418_residues
MTIELTPPPKKNPQKRSTSATRPPEARSRAALGLSAAAAEGRFALQVCAECQAVQYPPRDACAACIGTDLVWQDISPDGH
LLAETTIQTSTKLFFRERAPWRMGSVKLTAGPVVLCHVHGDCTRGGPVKILNRLDKSGQAVLIAIPPERTEHMDDDPQLR
AMSANPKHRRILITDAWNPNTPALAKALLEAGAATIFVGEAESWRPHPNRDTLAGMENVDILPLDVTDTASVQTLAGEIG
GKTDILINNARFMRPGGVLARGDTGFARDEMEVNYLGLMRLAQAFGPGMCARMADGVNSAAAWVNILSAHALSNAPDYGC
FSASNAAAYSLSQSLRGEFRSAGLRVMNVFVGPTDDDWYAPLPPPKVLPTGLARSVVDGLRDGLEDVWCGDIAKDMRDRW
RRDAKVLEREMTFGSEGA
>Mature_417_residues
TIELTPPPKKNPQKRSTSATRPPEARSRAALGLSAAAAEGRFALQVCAECQAVQYPPRDACAACIGTDLVWQDISPDGHL
LAETTIQTSTKLFFRERAPWRMGSVKLTAGPVVLCHVHGDCTRGGPVKILNRLDKSGQAVLIAIPPERTEHMDDDPQLRA
MSANPKHRRILITDAWNPNTPALAKALLEAGAATIFVGEAESWRPHPNRDTLAGMENVDILPLDVTDTASVQTLAGEIGG
KTDILINNARFMRPGGVLARGDTGFARDEMEVNYLGLMRLAQAFGPGMCARMADGVNSAAAWVNILSAHALSNAPDYGCF
SASNAAAYSLSQSLRGEFRSAGLRVMNVFVGPTDDDWYAPLPPPKVLPTGLARSVVDGLRDGLEDVWCGDIAKDMRDRWR
RDAKVLEREMTFGSEGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45092; Mature: 44961

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIELTPPPKKNPQKRSTSATRPPEARSRAALGLSAAAAEGRFALQVCAECQAVQYPPRD
CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHCCCHHHHHHHHHHHHCCCCCHH
ACAACIGTDLVWQDISPDGHLLAETTIQTSTKLFFRERAPWRMGSVKLTAGPVVLCHVHG
HHHHHHCCCCEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEEECC
DCTRGGPVKILNRLDKSGQAVLIAIPPERTEHMDDDPQLRAMSANPKHRRILITDAWNPN
CCCCCCHHHHHHHCCCCCCEEEEEECCCHHCCCCCCCCEEEECCCCCCCEEEEEECCCCC
TPALAKALLEAGAATIFVGEAESWRPHPNRDTLAGMENVDILPLDVTDTASVQTLAGEIG
CHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHCCCCCCEEEEECCCCCCHHHHHHHHCC
GKTDILINNARFMRPGGVLARGDTGFARDEMEVNYLGLMRLAQAFGPGMCARMADGVNSA
CCEEEEECCCEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCHH
AAWVNILSAHALSNAPDYGCFSASNAAAYSLSQSLRGEFRSAGLRVMNVFVGPTDDDWYA
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCC
PLPPPKVLPTGLARSVVDGLRDGLEDVWCGDIAKDMRDRWRRDAKVLEREMTFGSEGA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TIELTPPPKKNPQKRSTSATRPPEARSRAALGLSAAAAEGRFALQVCAECQAVQYPPRD
EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHCCCHHHHHHHHHHHHCCCCCHH
ACAACIGTDLVWQDISPDGHLLAETTIQTSTKLFFRERAPWRMGSVKLTAGPVVLCHVHG
HHHHHHCCCCEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEEECC
DCTRGGPVKILNRLDKSGQAVLIAIPPERTEHMDDDPQLRAMSANPKHRRILITDAWNPN
CCCCCCHHHHHHHCCCCCCEEEEEECCCHHCCCCCCCCEEEECCCCCCCEEEEEECCCCC
TPALAKALLEAGAATIFVGEAESWRPHPNRDTLAGMENVDILPLDVTDTASVQTLAGEIG
CHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHCCCCCCEEEEECCCCCCHHHHHHHHCC
GKTDILINNARFMRPGGVLARGDTGFARDEMEVNYLGLMRLAQAFGPGMCARMADGVNSA
CCEEEEECCCEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCHH
AAWVNILSAHALSNAPDYGCFSASNAAAYSLSQSLRGEFRSAGLRVMNVFVGPTDDDWYA
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCC
PLPPPKVLPTGLARSVVDGLRDGLEDVWCGDIAKDMRDRWRRDAKVLEREMTFGSEGA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA