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The map label for this gene is ykgA [C]

Identifier: 89053809

GI number: 89053809

Start: 1282615

End: 1283499

Strand: Direct

Name: ykgA [C]

Synonym: Jann_1318

Alternate gene names: 89053809

Gene position: 1282615-1283499 (Clockwise)

Preceding gene: 89053808

Following gene: 89053810

Centisome position: 29.7

GC content: 60.11

Gene sequence:

>885_bases
TTGCCGCGCCGTTACGAAGATATTTATCCGTCCCTCCCGTTGCTTAACAGCGATGGGCTGGAGCACATGTCGGCCGCGTC
TCTGATGTCCGTGCGCTACTTTCAGGCAGAGCCGGACCGGATGCCGGAGGATGTTTTTGCCGAGCACCACATCCTTCTGA
ACCTCAAGGCCGAGCCGCACCGCGTGCAGAACACCCGCGATGGTGAGATGCGGGATTTCACCTTTTCCAAGAACGACATC
ATCGTCACACCTGCAGGCATGCGCTCGGGCTGGCGTTGGTTTGCGCAATCCGATGTAATTGTCGTCACCCTCCTGCCTGA
CCGGGTGCAGCGCTTTGCCGAAACCGAGTTGGGGCTGCTTCTGGACCCACAGCAATTGGGTGATCTTCCATTGTTCTCGG
ACGCGGACCTCTGCGCGGCGGGCGTGATGTTGCGCGATGCGTTGGAGGCCGACGATATGAGCTCTGCAGTGATGTTCGAG
GCGCTCAGCCGGGTATTTTTGGTCAAGCTCCTGCAACGTTACGGCAAACGGCGTCCCGAAGACGTCGCACTGTCCTCGCG
TTTCACGTCGGCCCATTACAACCGCGTGCTGGCATTCATCCGCGCCAATCTGGAGCGCACGATCACGCTTGATGATCTGG
CGTCCGAGGCTGGGATGAGCCCGTCGCATTTCAGCCGCCTGTTCAAGGACACGGTCGGTACACCGCCAATGCAATACGTC
ATGGCCTACCGGATCGAGCAATCGCTTGCGATGATGACGGATCAGGGTCGGGCTTTGGGCGATATCGCCCTGGCCTGCGG
GTTCGCCGATCAGGCGCATTTCAGCCGCAGCTTCAAGCAACTGATGGGCGCGACGCCCCGGCAACATCGGTCAAGCCTGA
GCTGA

Upstream 100 bases:

>100_bases
GGCAGAGAAGAGTTTTGATCGCGGTTGGCCTGGCTAGTCGGGAGCAATGGAGCTGGCCCGCCGGGTCGCATTCGCCTTGG
ACTTTTGAAGGAACCACGTT

Downstream 100 bases:

>100_bases
TCGTTCAAAAAAGCACGATCATTCAAAAACCGATCAAGCCGCTTCAATTAATGGGGGCTGGGGCGGCGTATCTCCAATGT
CATCGGGCAGACAGCCCAAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Protein; AraC Family Transcription Regulator; AraC-Family Transcriptional Regulator; Two Component Transcriptional Regulator AraC Family; Helix-Turn-Helix- Domain Containing Protein AraC Type; AraC Family Transcription Regulator Protein; AraC Family Two Component Transcriptional Regulator; Transcriptional Regulator AraC; Two Component System Response Regulator; Transcriptional Regulator AraC-Type; Regulator; Transcriptional Activator; AraC Family Regulatory Protein; AraC/XylS Family Transcriptional Regulator; Transcriptional Regulatory Protein; Methylphosphotriester-DNA Alkyltransferase; HTH-Type Transcriptional Regulator ChbR; Transcription Regulator Protein; Helix-Turn-Helix AraC Type; L-Rhamnose Operon Transcriptional Activator RhaR; AraC-Type Trancriptional Regulator; AraC Family Helix-Turn-Helix Transcriptional Regulator; Transcription Regulator; Xyls/AraC-Type Transcriptional Activator; Response Regulator Receiver Protein

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MPRRYEDIYPSLPLLNSDGLEHMSAASLMSVRYFQAEPDRMPEDVFAEHHILLNLKAEPHRVQNTRDGEMRDFTFSKNDI
IVTPAGMRSGWRWFAQSDVIVVTLLPDRVQRFAETELGLLLDPQQLGDLPLFSDADLCAAGVMLRDALEADDMSSAVMFE
ALSRVFLVKLLQRYGKRRPEDVALSSRFTSAHYNRVLAFIRANLERTITLDDLASEAGMSPSHFSRLFKDTVGTPPMQYV
MAYRIEQSLAMMTDQGRALGDIALACGFADQAHFSRSFKQLMGATPRQHRSSLS

Sequences:

>Translated_294_residues
MPRRYEDIYPSLPLLNSDGLEHMSAASLMSVRYFQAEPDRMPEDVFAEHHILLNLKAEPHRVQNTRDGEMRDFTFSKNDI
IVTPAGMRSGWRWFAQSDVIVVTLLPDRVQRFAETELGLLLDPQQLGDLPLFSDADLCAAGVMLRDALEADDMSSAVMFE
ALSRVFLVKLLQRYGKRRPEDVALSSRFTSAHYNRVLAFIRANLERTITLDDLASEAGMSPSHFSRLFKDTVGTPPMQYV
MAYRIEQSLAMMTDQGRALGDIALACGFADQAHFSRSFKQLMGATPRQHRSSLS
>Mature_293_residues
PRRYEDIYPSLPLLNSDGLEHMSAASLMSVRYFQAEPDRMPEDVFAEHHILLNLKAEPHRVQNTRDGEMRDFTFSKNDII
VTPAGMRSGWRWFAQSDVIVVTLLPDRVQRFAETELGLLLDPQQLGDLPLFSDADLCAAGVMLRDALEADDMSSAVMFEA
LSRVFLVKLLQRYGKRRPEDVALSSRFTSAHYNRVLAFIRANLERTITLDDLASEAGMSPSHFSRLFKDTVGTPPMQYVM
AYRIEQSLAMMTDQGRALGDIALACGFADQAHFSRSFKQLMGATPRQHRSSLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082197, Length=242, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790857, Length=97, Percent_Identity=34.020618556701, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790559, Length=105, Percent_Identity=27.6190476190476, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33195; Mature: 33064

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRRYEDIYPSLPLLNSDGLEHMSAASLMSVRYFQAEPDRMPEDVFAEHHILLNLKAEPH
CCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEEECCCCH
RVQNTRDGEMRDFTFSKNDIIVTPAGMRSGWRWFAQSDVIVVTLLPDRVQRFAETELGLL
HCCCCCCCCCEEEEECCCCEEEECCCCCCCCCEECCCCEEEEEECHHHHHHHHHHHCCEE
LDPQQLGDLPLFSDADLCAAGVMLRDALEADDMSSAVMFEALSRVFLVKLLQRYGKRRPE
ECHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DVALSSRFTSAHYNRVLAFIRANLERTITLDDLASEAGMSPSHFSRLFKDTVGTPPMQYV
HHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
MAYRIEQSLAMMTDQGRALGDIALACGFADQAHFSRSFKQLMGATPRQHRSSLS
HHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure 
PRRYEDIYPSLPLLNSDGLEHMSAASLMSVRYFQAEPDRMPEDVFAEHHILLNLKAEPH
CCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEEECCCCH
RVQNTRDGEMRDFTFSKNDIIVTPAGMRSGWRWFAQSDVIVVTLLPDRVQRFAETELGLL
HCCCCCCCCCEEEEECCCCEEEECCCCCCCCCEECCCCEEEEEECHHHHHHHHHHHCCEE
LDPQQLGDLPLFSDADLCAAGVMLRDALEADDMSSAVMFEALSRVFLVKLLQRYGKRRPE
ECHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DVALSSRFTSAHYNRVLAFIRANLERTITLDDLASEAGMSPSHFSRLFKDTVGTPPMQYV
HHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
MAYRIEQSLAMMTDQGRALGDIALACGFADQAHFSRSFKQLMGATPRQHRSSLS
HHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA