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The map label for this gene is ydhC [H]

Identifier: 89053655

GI number: 89053655

Start: 1130340

End: 1130996

Strand: Direct

Name: ydhC [H]

Synonym: Jann_1164

Alternate gene names: 89053655

Gene position: 1130340-1130996 (Clockwise)

Preceding gene: 89053654

Following gene: 89053656

Centisome position: 26.18

GC content: 57.84

Gene sequence:

>657_bases
ATGAACCTGTCGACACCACTCTCCCGACCGTCGTTGCATGAAGAACTGGTAACGCGCTTGCGGCAGGCCATTGTCCAGGG
TGCGTTGGAACCTGGCGTAAAGGTACCTGAACGGGAATTATGCGAAAACCTGGGCGTGTCGCGCACACCTTTGCGCGAAG
CATTGAAGGTGCTTGCCAACGAAGGTCTTGTGGTTCTGGAGTCCAACAAGGGCGCCCGAATTTCCAAAGTGACGATGGAG
CAGTTGGAAGACGCCTTTCCGGTGATAGCCGTGCTCGAAGGTCTGGCCGGAGAGCTGGCCTGCAAACTGGCCACAGATCA
AGAGATTGCCGACCTCGTTGCCCGCCATGACGACATGTTTCAGCATTACAAGTCTGGCGACAGACCCGCCTATTTCCAGG
CCAATCGCGATATCCATGCCGGACTTATGGCAGCAGCGCGCAACGAGGTGCTGACACAACATTACGCGATGCTGTCCTCG
CGGGTGGAGCGGGCCCGGCTTCTGGCGAATATGTCCGACATCCGCTGGGCCGAGGCTGTCGAGGAGCACCGCTCTATTGT
CAAAGCGATTGAAGCGCGCGATGGCACCCGCCTCAGTTCGCTGCTCCGGACGCACCTAAACAACAAACTAGCCGCGTTGA
GAAAGGCGTTGTCATGA

Upstream 100 bases:

>100_bases
GGGACATCCTGTCGCCACCAGATCGCGGATGGCACGGATCGCAATGCGATCCATGTGGCCCGCGTGCTTGAAATGGCTTT
GGCAAAAGGAGGCCAATGAA

Downstream 100 bases:

>100_bases
GCAATGCCGCAAATCAGGCTTCGCAAAAATCTGTTGGCAATTTTGCAAGCGCTCTCATTCGGGCTCACATGTCCAACACC
CGGTTCTTTCCTGATGGCCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MNLSTPLSRPSLHEELVTRLRQAIVQGALEPGVKVPERELCENLGVSRTPLREALKVLANEGLVVLESNKGARISKVTME
QLEDAFPVIAVLEGLAGELACKLATDQEIADLVARHDDMFQHYKSGDRPAYFQANRDIHAGLMAAARNEVLTQHYAMLSS
RVERARLLANMSDIRWAEAVEEHRSIVKAIEARDGTRLSSLLRTHLNNKLAALRKALS

Sequences:

>Translated_218_residues
MNLSTPLSRPSLHEELVTRLRQAIVQGALEPGVKVPERELCENLGVSRTPLREALKVLANEGLVVLESNKGARISKVTME
QLEDAFPVIAVLEGLAGELACKLATDQEIADLVARHDDMFQHYKSGDRPAYFQANRDIHAGLMAAARNEVLTQHYAMLSS
RVERARLLANMSDIRWAEAVEEHRSIVKAIEARDGTRLSSLLRTHLNNKLAALRKALS
>Mature_218_residues
MNLSTPLSRPSLHEELVTRLRQAIVQGALEPGVKVPERELCENLGVSRTPLREALKVLANEGLVVLESNKGARISKVTME
QLEDAFPVIAVLEGLAGELACKLATDQEIADLVARHDDMFQHYKSGDRPAYFQANRDIHAGLMAAARNEVLTQHYAMLSS
RVERARLLANMSDIRWAEAVEEHRSIVKAIEARDGTRLSSLLRTHLNNKLAALRKALS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=208, Percent_Identity=22.5961538461538, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87082149, Length=208, Percent_Identity=25.4807692307692, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24176; Mature: 24176

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSTPLSRPSLHEELVTRLRQAIVQGALEPGVKVPERELCENLGVSRTPLREALKVLAN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHC
EGLVVLESNKGARISKVTMEQLEDAFPVIAVLEGLAGELACKLATDQEIADLVARHDDMF
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
QHYKSGDRPAYFQANRDIHAGLMAAARNEVLTQHYAMLSSRVERARLLANMSDIRWAEAV
HHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEHRSIVKAIEARDGTRLSSLLRTHLNNKLAALRKALS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNLSTPLSRPSLHEELVTRLRQAIVQGALEPGVKVPERELCENLGVSRTPLREALKVLAN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHC
EGLVVLESNKGARISKVTMEQLEDAFPVIAVLEGLAGELACKLATDQEIADLVARHDDMF
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
QHYKSGDRPAYFQANRDIHAGLMAAARNEVLTQHYAMLSSRVERARLLANMSDIRWAEAV
HHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEHRSIVKAIEARDGTRLSSLLRTHLNNKLAALRKALS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]