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The map label for this gene is 89053604

Identifier: 89053604

GI number: 89053604

Start: 1072273

End: 1073328

Strand: Direct

Name: 89053604

Synonym: Jann_1113

Alternate gene names: NA

Gene position: 1072273-1073328 (Clockwise)

Preceding gene: 89053603

Following gene: 89053605

Centisome position: 24.83

GC content: 64.58

Gene sequence:

>1056_bases
ATGAAATCAGTCGGTTACGCCATGCTCGCCCTGCTTGCAGCCGGGTCTGCCACCGCCCAGACTTGGCAATCGGATACCGG
CGACAGCACGGCGCTGCTCTATGCGGGGGCCTTCGCGCCCGGGGGCACCACCTCGTTTTCCTGCACGACGCCCTCGCCGC
AGAATGTGCCCCTGATCGAGACCGGTGATCACGAATCTATCCGCACCGATACGCCCTACGACATCGTCGTCGGCTTCAAC
ATCGACCTGATGGATCCCTTCACGCTGCCCGAGCAGTTGGACACTGTGCGCATCATCCTCGACGACGTGCCCTATACGCT
CCCGAGGGTGAGCTATTCTGATTTCTACGGCTCCTGGACGGTATGGATGCAGATGACGGACGGCCTGTTTCCGGCCCTGA
CCCGCGCGCAGAGCATGGTGGTCGATACCGGCACGGGCACGGCCTATGCCTACCCCACCGACGGGCTGCGGGATGCCGTC
CTGGCGACCGTGAATTTCTGCATATCGGGGTGGGAGGCGCAGGGTGATATCGCGCCCCGGGCCTTATCCGCCTGGTCCGG
CGGGCAACTCGCGCCCGCGCCCGCGCCGATTGCTGCACCCACCCCCGCCTCGACCCCAGCGCCCTCCGGTGGTCAGGCCC
TCTTGCCCGGTCTCTCGCCCGCACCCACCTTCCCGATCCCGGATCAGGCGCCGCAAGTGGCGATCGACCGGATGGTCGCG
CAGTGTCAGGGGGAGTTTTCGGTCGACCCGAGCGCCGTGCAGGCCGCCGATGTCGACGGCGACGGCGCGCCTGACTACAT
CCTGAACTATTCCGGGGTCGAGTGTTTCGGCGGGCTCACAGGACGCGCCTATTGTGGGGCTGCGAATTGCCAGTTTGACG
TCTTTCTATCGAGCCGGGCCTATGCCAACCCATCAGAATTTCTCGCCATCGCGCTTGATCCTGTGGTCGATGGGCAGGGG
CGCACGGGCCTTCTGATGGCCAGCACGCTGTTTGGCTGTGCGGACGGCGCATGCGACACGCCATTTTATTGGGACGGAAC
CCAATTCACACAATAA

Upstream 100 bases:

>100_bases
CCGACCTTGACCATTCCGCCGTGCCGTCGATGACCGGCGATGCCGCGCTCTACCATGTCATTGCCACTGATGATCCGGCC
GGAGCCACATGGAGCGCGCC

Downstream 100 bases:

>100_bases
AAACTGAGGGACACAATGATCAAAACAACCCATGTGGGCAGCCTGCCGCGCACCCAGGACGTCGTGGACTTCATCTTTGC
CCGGGAAAATGGCGAGACCT

Product: integrins subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MKSVGYAMLALLAAGSATAQTWQSDTGDSTALLYAGAFAPGGTTSFSCTTPSPQNVPLIETGDHESIRTDTPYDIVVGFN
IDLMDPFTLPEQLDTVRIILDDVPYTLPRVSYSDFYGSWTVWMQMTDGLFPALTRAQSMVVDTGTGTAYAYPTDGLRDAV
LATVNFCISGWEAQGDIAPRALSAWSGGQLAPAPAPIAAPTPASTPAPSGGQALLPGLSPAPTFPIPDQAPQVAIDRMVA
QCQGEFSVDPSAVQAADVDGDGAPDYILNYSGVECFGGLTGRAYCGAANCQFDVFLSSRAYANPSEFLAIALDPVVDGQG
RTGLLMASTLFGCADGACDTPFYWDGTQFTQ

Sequences:

>Translated_351_residues
MKSVGYAMLALLAAGSATAQTWQSDTGDSTALLYAGAFAPGGTTSFSCTTPSPQNVPLIETGDHESIRTDTPYDIVVGFN
IDLMDPFTLPEQLDTVRIILDDVPYTLPRVSYSDFYGSWTVWMQMTDGLFPALTRAQSMVVDTGTGTAYAYPTDGLRDAV
LATVNFCISGWEAQGDIAPRALSAWSGGQLAPAPAPIAAPTPASTPAPSGGQALLPGLSPAPTFPIPDQAPQVAIDRMVA
QCQGEFSVDPSAVQAADVDGDGAPDYILNYSGVECFGGLTGRAYCGAANCQFDVFLSSRAYANPSEFLAIALDPVVDGQG
RTGLLMASTLFGCADGACDTPFYWDGTQFTQ
>Mature_351_residues
MKSVGYAMLALLAAGSATAQTWQSDTGDSTALLYAGAFAPGGTTSFSCTTPSPQNVPLIETGDHESIRTDTPYDIVVGFN
IDLMDPFTLPEQLDTVRIILDDVPYTLPRVSYSDFYGSWTVWMQMTDGLFPALTRAQSMVVDTGTGTAYAYPTDGLRDAV
LATVNFCISGWEAQGDIAPRALSAWSGGQLAPAPAPIAAPTPASTPAPSGGQALLPGLSPAPTFPIPDQAPQVAIDRMVA
QCQGEFSVDPSAVQAADVDGDGAPDYILNYSGVECFGGLTGRAYCGAANCQFDVFLSSRAYANPSEFLAIALDPVVDGQG
RTGLLMASTLFGCADGACDTPFYWDGTQFTQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36701; Mature: 36701

Theoretical pI: Translated: 3.66; Mature: 3.66

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSVGYAMLALLAAGSATAQTWQSDTGDSTALLYAGAFAPGGTTSFSCTTPSPQNVPLIE
CCCHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCEEE
TGDHESIRTDTPYDIVVGFNIDLMDPFTLPEQLDTVRIILDDVPYTLPRVSYSDFYGSWT
CCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCEEEEEEECCCCCCCCCCHHHCCCCEE
VWMQMTDGLFPALTRAQSMVVDTGTGTAYAYPTDGLRDAVLATVNFCISGWEAQGDIAPR
EEEEECCCHHHHHHHCCEEEEECCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCH
ALSAWSGGQLAPAPAPIAAPTPASTPAPSGGQALLPGLSPAPTFPIPDQAPQVAIDRMVA
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHH
QCQGEFSVDPSAVQAADVDGDGAPDYILNYSGVECFGGLTGRAYCGAANCQFDVFLSSRA
HHCCCCCCCHHHEEEECCCCCCCCCEEEECCCCCEECCCCCCEEECCCCCEEEEEECCCC
YANPSEFLAIALDPVVDGQGRTGLLMASTLFGCADGACDTPFYWDGTQFTQ
CCCHHHEEEEEEEEEECCCCCCEEEEHHHHHHCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MKSVGYAMLALLAAGSATAQTWQSDTGDSTALLYAGAFAPGGTTSFSCTTPSPQNVPLIE
CCCHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCEEE
TGDHESIRTDTPYDIVVGFNIDLMDPFTLPEQLDTVRIILDDVPYTLPRVSYSDFYGSWT
CCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCEEEEEEECCCCCCCCCCHHHCCCCEE
VWMQMTDGLFPALTRAQSMVVDTGTGTAYAYPTDGLRDAVLATVNFCISGWEAQGDIAPR
EEEEECCCHHHHHHHCCEEEEECCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCH
ALSAWSGGQLAPAPAPIAAPTPASTPAPSGGQALLPGLSPAPTFPIPDQAPQVAIDRMVA
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHH
QCQGEFSVDPSAVQAADVDGDGAPDYILNYSGVECFGGLTGRAYCGAANCQFDVFLSSRA
HHCCCCCCCHHHEEEECCCCCCCCCEEEECCCCCEECCCCCCEEECCCCCEEEEEECCCC
YANPSEFLAIALDPVVDGQGRTGLLMASTLFGCADGACDTPFYWDGTQFTQ
CCCHHHEEEEEEEEEECCCCCCEEEEHHHHHHCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA