Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89053362
Identifier: 89053362
GI number: 89053362
Start: 827308
End: 827862
Strand: Direct
Name: 89053362
Synonym: Jann_0871
Alternate gene names: NA
Gene position: 827308-827862 (Clockwise)
Preceding gene: 89053361
Following gene: 89053363
Centisome position: 19.16
GC content: 61.98
Gene sequence:
>555_bases ATGAGCCAGGGGCACGATCAGCCCCCGGCCTCGGGTGACGCGGATCGGGCACCCTCCCTGTCCAGTATCGACAGGGTGCT TGGCACCTTGTCCCGCGTCGCGGCGGGGATCGGCGCTTTGTGGATCTTTGGCATCATGGTGTTGATCAACCTGGATGTCG TGATGCGCGGTGTCGCCTCCGCCCCCTTGCCGGCGGTGCCAGAATTCGTGGCGCTCTCCATCACCGGGATCGTGTTCCTG CAACTGGCGGCCGCCCTCCGCTCAGGCCGGTTCATCAAATCAGACGCCCTGGGTGCGATCCTGTTTGAGCGGGTCCCAGT CCTGGGCCGTGTATTGCGACCTGCGATGTACGCCCTTGGCGCGACCTTATTTTCCGTTCTGGCCTATGCCAGCTGGCGCA TTTTGATGCGCGCGATTGAACGCGGCACCTATGTGGGCACCATCGGCGGCGTTACGTTTCCAATCTGGCCGATCTCTCTG ATCATCGTGTTGGGGGCCTGCCTCGTGGCGCTGGAATATGCGCTGATGGCCTTGAAAGAGGTATTGAGTAGATGA
Upstream 100 bases:
>100_bases TCCAGGAGGAGAACGGCTTGCCCGGCGACGCGGTCCTGTCCGCGTTCATGTCGGCGCTGCGCGAGGCCGGTGAAACGCCG CCGCGCGACTGGGACACGGA
Downstream 100 bases:
>100_bases GTTTTGAGCTGACCGTGGGCTTCGGCTCCGTCTTTCTGATGGTTGCGCTGATCTGGCTTGGACTGCACGTGGCCGTCGCG CTGGCTGCGGCAAGCTTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 184; Mature: 183
Protein sequence:
>184_residues MSQGHDQPPASGDADRAPSLSSIDRVLGTLSRVAAGIGALWIFGIMVLINLDVVMRGVASAPLPAVPEFVALSITGIVFL QLAAALRSGRFIKSDALGAILFERVPVLGRVLRPAMYALGATLFSVLAYASWRILMRAIERGTYVGTIGGVTFPIWPISL IIVLGACLVALEYALMALKEVLSR
Sequences:
>Translated_184_residues MSQGHDQPPASGDADRAPSLSSIDRVLGTLSRVAAGIGALWIFGIMVLINLDVVMRGVASAPLPAVPEFVALSITGIVFL QLAAALRSGRFIKSDALGAILFERVPVLGRVLRPAMYALGATLFSVLAYASWRILMRAIERGTYVGTIGGVTFPIWPISL IIVLGACLVALEYALMALKEVLSR >Mature_183_residues SQGHDQPPASGDADRAPSLSSIDRVLGTLSRVAAGIGALWIFGIMVLINLDVVMRGVASAPLPAVPEFVALSITGIVFLQ LAAALRSGRFIKSDALGAILFERVPVLGRVLRPAMYALGATLFSVLAYASWRILMRAIERGTYVGTIGGVTFPIWPISLI IVLGACLVALEYALMALKEVLSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19490; Mature: 19358
Theoretical pI: Translated: 9.99; Mature: 9.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQGHDQPPASGDADRAPSLSSIDRVLGTLSRVAAGIGALWIFGIMVLINLDVVMRGVAS CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APLPAVPEFVALSITGIVFLQLAAALRSGRFIKSDALGAILFERVPVLGRVLRPAMYALG CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATLFSVLAYASWRILMRAIERGTYVGTIGGVTFPIWPISLIIVLGACLVALEYALMALKE HHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLSR HHCC >Mature Secondary Structure SQGHDQPPASGDADRAPSLSSIDRVLGTLSRVAAGIGALWIFGIMVLINLDVVMRGVAS CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APLPAVPEFVALSITGIVFLQLAAALRSGRFIKSDALGAILFERVPVLGRVLRPAMYALG CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATLFSVLAYASWRILMRAIERGTYVGTIGGVTFPIWPISLIIVLGACLVALEYALMALKE HHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLSR HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA