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The map label for this gene is ybfP [H]

Identifier: 89053200

GI number: 89053200

Start: 681990

End: 682679

Strand: Direct

Name: ybfP [H]

Synonym: Jann_0709

Alternate gene names: 89053200

Gene position: 681990-682679 (Clockwise)

Preceding gene: 89053199

Following gene: 89053203

Centisome position: 15.79

GC content: 65.22

Gene sequence:

>690_bases
ATGACATTGACGATTGAGCGGGCCAAGGCCCGTGCCAAAACCTTGCGTGCCGGGCTAGAGGCCTTGGACCGCACCATCAC
CCATGGCCAGGCATTGGACCTGATTGCCAAGTTGGAAGGACTGGCCGACTGGAACGTCCTGTCCGCGCGGCTACAGCCTG
AAGTCCCCATCGGCCCGCTGCCCAACGGCTGGACCCGCGCGGGGGATCAGCCCGAGAGGTTCGAGATGGGCCAAGCGATG
CGCGCAGACACCCCAGCGGCGGCCATTCGCCTGAAACCGGGGGAGGAGGCAGGATCTGCCTTCGCCACGCTGATGCAATC
GGTCGACGCGACGGTCTATCGTGGGCAGCGCATGATGTTGACAGGGCGGCTGGCGGCAGATGCCGTGACCGGAGGCGTGA
CGATCTGGATGCGCGCCGATGACATTGGCAAGCGAATGGTGGCGTTTGACAATCTGGAGGAAGCGGGACCCGACAAAGGC
CCGGTGACAGGCACCAGCGATTGGGTCGAACGCCGCATCATCCTCGATATCCCCGAGGTCGCCCAGACGCTGAACTTTGG
CTTCTACCTGCGTGGGCGTGGCACGGCGTGGTGCGCGGGGGTTGCCTTGGACCACGCGCCAGACGGCACGGACGTGACGC
GAACCGGCACATCACCCGCCCCGGCGCCCCAGAACCTGTCATTTGAGTAG

Upstream 100 bases:

>100_bases
GCGCCAAAACGATCCGATGATCCACACAGCCTTTCGCGGCAGGAGCATTGGGCAACGCGGGCACCCAGATCGGCCTTCTG
CCTCGTGAGAGGATATACCC

Downstream 100 bases:

>100_bases
TATTGCCGCCGGGAGGGCTCTGTCCCGCCGGGTGATTTGACGGCCGATCCCATCATGGGTGGCGCAGGCGCGGGCGTCTG
AGGTGGGCGACTGACGCGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTLTIERAKARAKTLRAGLEALDRTITHGQALDLIAKLEGLADWNVLSARLQPEVPIGPLPNGWTRAGDQPERFEMGQAM
RADTPAAAIRLKPGEEAGSAFATLMQSVDATVYRGQRMMLTGRLAADAVTGGVTIWMRADDIGKRMVAFDNLEEAGPDKG
PVTGTSDWVERRIILDIPEVAQTLNFGFYLRGRGTAWCAGVALDHAPDGTDVTRTGTSPAPAPQNLSFE

Sequences:

>Translated_229_residues
MTLTIERAKARAKTLRAGLEALDRTITHGQALDLIAKLEGLADWNVLSARLQPEVPIGPLPNGWTRAGDQPERFEMGQAM
RADTPAAAIRLKPGEEAGSAFATLMQSVDATVYRGQRMMLTGRLAADAVTGGVTIWMRADDIGKRMVAFDNLEEAGPDKG
PVTGTSDWVERRIILDIPEVAQTLNFGFYLRGRGTAWCAGVALDHAPDGTDVTRTGTSPAPAPQNLSFE
>Mature_228_residues
TLTIERAKARAKTLRAGLEALDRTITHGQALDLIAKLEGLADWNVLSARLQPEVPIGPLPNGWTRAGDQPERFEMGQAMR
ADTPAAAIRLKPGEEAGSAFATLMQSVDATVYRGQRMMLTGRLAADAVTGGVTIWMRADDIGKRMVAFDNLEEAGPDKGP
VTGTSDWVERRIILDIPEVAQTLNFGFYLRGRGTAWCAGVALDHAPDGTDVTRTGTSPAPAPQNLSFE

Specific function: Probable transcriptional regulator [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 24626; Mature: 24495

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTIERAKARAKTLRAGLEALDRTITHGQALDLIAKLEGLADWNVLSARLQPEVPIGPL
CEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCC
PNGWTRAGDQPERFEMGQAMRADTPAAAIRLKPGEEAGSAFATLMQSVDATVYRGQRMML
CCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEE
TGRLAADAVTGGVTIWMRADDIGKRMVAFDNLEEAGPDKGPVTGTSDWVERRIILDIPEV
ECCHHHHHCCCCEEEEEECCCCCCHHHHHCCHHHCCCCCCCCCCCHHHHHCEEEEECHHH
AQTLNFGFYLRGRGTAWCAGVALDHAPDGTDVTRTGTSPAPAPQNLSFE
HHHHCCCEEEECCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLTIERAKARAKTLRAGLEALDRTITHGQALDLIAKLEGLADWNVLSARLQPEVPIGPL
EEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCC
PNGWTRAGDQPERFEMGQAMRADTPAAAIRLKPGEEAGSAFATLMQSVDATVYRGQRMML
CCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEE
TGRLAADAVTGGVTIWMRADDIGKRMVAFDNLEEAGPDKGPVTGTSDWVERRIILDIPEV
ECCHHHHHCCCCEEEEEECCCCCCHHHHHCCHHHCCCCCCCCCCCHHHHHCEEEEECHHH
AQTLNFGFYLRGRGTAWCAGVALDHAPDGTDVTRTGTSPAPAPQNLSFE
HHHHCCCEEEECCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]