Click here to switch to the map view.

The map label for this gene is 88658484

Identifier: 88658484

GI number: 88658484

Start: 999158

End: 999775

Strand: Direct

Name: 88658484

Synonym: ECH_0976

Alternate gene names: NA

Gene position: 999158-999775 (Clockwise)

Preceding gene: 88658610

Following gene: 88658150

Centisome position: 84.94

GC content: 28.16

Gene sequence:

>618_bases
ATGAAAGTTATCAAATTTATACTTAATATCTGTTTATTATTTGCAGCAATTTTTCTAGGATATTCCTACGTAACAAAACA
AGGCATTTTTCAAGTAAGAGATCATAACACTCCCAATACAAATATATCAAATAAAGCCAGCATTACTACTAGTTTTTCGT
TAGTAAATCAAGATGGAAATACAGTAAATAGTCAAGATTTTTTGGGAAAATACATGCTAGTTTTATTTGGATTTTCTTCA
TGTAAAAGCATCTGCCCTGCTGAATTAGGAATAGCATCTGAAGTTCTCTCACAGCTTGGTAATGACACAGACAAGTTACA
AGTAATTTTCATTACAATTGATCCAACAAATGATACTGTACAAAAATTAAAAACATTTCATGAACATTTTGATCCTAGAA
TTCAAATGCTAACAGGCAGTGCAGAAGATATTGAAAAAATAATAAAAAATTACAAAATATATGTTGGACAAGCAGATAAA
GATAATCAAATTGATCACTCTGCCATAATGTACATTATCGATAAAAAAGGAGAATACATTTCACACTTTTCTCCAGATTT
AAAATCAACAGAAAATCAAGTAGATAAGTTACTATCTATAATAAAACAATATCTCTAA

Upstream 100 bases:

>100_bases
TATACCATAAAAGATTTTAAGTAACTTGACATAATATTACCTTGGTATAGCATATGATTCAGTATTTTATATTAAAATTT
ATTATGTATTGGAGCATAAA

Downstream 100 bases:

>100_bases
TTTAATAATTAATTAAAGAGAATAGTACACACTCTTATATAAATTCATGGATATATGTGATGGGTAGATTTCTTTTGGTG
TTTCTATCGCTAATTACATT

Product: major antigenic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MKVIKFILNICLLFAAIFLGYSYVTKQGIFQVRDHNTPNTNISNKASITTSFSLVNQDGNTVNSQDFLGKYMLVLFGFSS
CKSICPAELGIASEVLSQLGNDTDKLQVIFITIDPTNDTVQKLKTFHEHFDPRIQMLTGSAEDIEKIIKNYKIYVGQADK
DNQIDHSAIMYIIDKKGEYISHFSPDLKSTENQVDKLLSIIKQYL

Sequences:

>Translated_205_residues
MKVIKFILNICLLFAAIFLGYSYVTKQGIFQVRDHNTPNTNISNKASITTSFSLVNQDGNTVNSQDFLGKYMLVLFGFSS
CKSICPAELGIASEVLSQLGNDTDKLQVIFITIDPTNDTVQKLKTFHEHFDPRIQMLTGSAEDIEKIIKNYKIYVGQADK
DNQIDHSAIMYIIDKKGEYISHFSPDLKSTENQVDKLLSIIKQYL
>Mature_205_residues
MKVIKFILNICLLFAAIFLGYSYVTKQGIFQVRDHNTPNTNISNKASITTSFSLVNQDGNTVNSQDFLGKYMLVLFGFSS
CKSICPAELGIASEVLSQLGNDTDKLQVIFITIDPTNDTVQKLKTFHEHFDPRIQMLTGSAEDIEKIIKNYKIYVGQADK
DNQIDHSAIMYIIDKKGEYISHFSPDLKSTENQVDKLLSIIKQYL

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=154, Percent_Identity=30.5194805194805, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI281182727, Length=139, Percent_Identity=30.9352517985612, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI281182722, Length=139, Percent_Identity=30.9352517985612, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI281182716, Length=139, Percent_Identity=30.9352517985612, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI153791313, Length=139, Percent_Identity=30.9352517985612, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17531419, Length=189, Percent_Identity=29.1005291005291, Blast_Score=105, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6319511, Length=200, Percent_Identity=29, Blast_Score=93, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6319498, Length=167, Percent_Identity=29.940119760479, Blast_Score=93, Evalue=3e-20,
Organism=Drosophila melanogaster, GI19920710, Length=147, Percent_Identity=36.734693877551, Blast_Score=115, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23143; Mature: 23143

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVIKFILNICLLFAAIFLGYSYVTKQGIFQVRDHNTPNTNISNKASITTSFSLVNQDGN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCC
TVNSQDFLGKYMLVLFGFSSCKSICPAELGIASEVLSQLGNDTDKLQVIFITIDPTNDTV
CCCHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHCCCCCCEEEEEEEECCCCHHH
QKLKTFHEHFDPRIQMLTGSAEDIEKIIKNYKIYVGQADKDNQIDHSAIMYIIDKKGEYI
HHHHHHHHHCCCEEEEECCCHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEECCCCCHH
SHFSPDLKSTENQVDKLLSIIKQYL
HHCCCCHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKVIKFILNICLLFAAIFLGYSYVTKQGIFQVRDHNTPNTNISNKASITTSFSLVNQDGN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCC
TVNSQDFLGKYMLVLFGFSSCKSICPAELGIASEVLSQLGNDTDKLQVIFITIDPTNDTV
CCCHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHCCCCCCEEEEEEEECCCCHHH
QKLKTFHEHFDPRIQMLTGSAEDIEKIIKNYKIYVGQADKDNQIDHSAIMYIIDKKGEYI
HHHHHHHHHCCCEEEEECCCHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEECCCCCHH
SHFSPDLKSTENQVDKLLSIIKQYL
HHCCCCHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA