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The map label for this gene is hup [C]

Identifier: 88657616

GI number: 88657616

Start: 819010

End: 819294

Strand: Direct

Name: hup [C]

Synonym: ECH_0804

Alternate gene names: 88657616

Gene position: 819010-819294 (Clockwise)

Preceding gene: 88658108

Following gene: 88657924

Centisome position: 69.63

GC content: 31.23

Gene sequence:

>285_bases
ATGAGTAAGGATATGGTAGTTAGAACACTCATGGGAGAGTTAGGATTAACAAAAAAGGTATCAAGTCAAGCTTATGACCT
AGTAATGCTAAGTATACAAAATGCACTAGAAACTTCTCATCTAATTAGGTTACACAATGTTGGAACACTACATGTTATCC
AATGTGCAGAAAAAAAATATCATAACCCTAAAACTGGGAAGTTAGAAACACTAGCTCCTAAGAAAAGAGTAAGATTTAGA
TCAAGCAAAAAATTATCAAATGCTATTAACCTTTTAGATAATTAA

Upstream 100 bases:

>100_bases
TAATAATGCTTTAAGTAATAACAAATAAATTTAGTTGACTATATGAACTAACCTAATATCCTAAATCTTGTTCAGTTATG
TAAAATTAGGAGTTAAAATT

Downstream 100 bases:

>100_bases
TTAGGAGCGCTAGCAATGGCCTTTTTCATTTTATGAACGGATGTACCTATACCATGTAGTACAGATTCACAAATTAAAAA
ATGCCCTATGTTAAGTGCTG

Product: DNA-binding protein HU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MSKDMVVRTLMGELGLTKKVSSQAYDLVMLSIQNALETSHLIRLHNVGTLHVIQCAEKKYHNPKTGKLETLAPKKRVRFR
SSKKLSNAINLLDN

Sequences:

>Translated_94_residues
MSKDMVVRTLMGELGLTKKVSSQAYDLVMLSIQNALETSHLIRLHNVGTLHVIQCAEKKYHNPKTGKLETLAPKKRVRFR
SSKKLSNAINLLDN
>Mature_93_residues
SKDMVVRTLMGELGLTKKVSSQAYDLVMLSIQNALETSHLIRLHNVGTLHVIQCAEKKYHNPKTGKLETLAPKKRVRFRS
SKKLSNAINLLDN

Specific function: Histone-Like DNA-Binding Protein Which Is Capable Of Wrapping DNA To Stabilize It, And Thus To Prevent Its Denaturation Under Extreme Environmental Conditions. [C]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10602; Mature: 10470

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDMVVRTLMGELGLTKKVSSQAYDLVMLSIQNALETSHLIRLHNVGTLHVIQCAEKKY
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEHHHHC
HNPKTGKLETLAPKKRVRFRSSKKLSNAINLLDN
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKDMVVRTLMGELGLTKKVSSQAYDLVMLSIQNALETSHLIRLHNVGTLHVIQCAEKKY
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEHHHHC
HNPKTGKLETLAPKKRVRFRSSKKLSNAINLLDN
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA