Click here to switch to the map view.

The map label for this gene is xseB

Identifier: 88607825

GI number: 88607825

Start: 85386

End: 85613

Strand: Direct

Name: xseB

Synonym: APH_0079

Alternate gene names: 88607825

Gene position: 85386-85613 (Clockwise)

Preceding gene: 88607622

Following gene: 88607899

Centisome position: 5.8

GC content: 34.21

Gene sequence:

>228_bases
ATGTCCATTCATATCAGTAGTAAGTTCGAAGAAGCGATGAAAGAACTGGAAAATATAGTGGCAGAGTTGGAGTCTGGTAA
TGTACCCTTAGAACGAAGTGTAGAGCTTTTCAATAAAGGTAAAGAACTCCATAAATATTGTGATAAAGTAATAAAAGAAA
TTTCACTACATATTGAATCTGTTGACCCTGATGACAAAGAGTTGAGTGCAAAATTCAGTGATGACTAA

Upstream 100 bases:

>100_bases
TTTAGCAGGCCGATGGACCAGTGCACGTGACCCATTCTTATTCACTTGTAATCATTTACGAACAGAGTACGATACATTAA
GTGTAACAGGTATTGCCTAA

Downstream 100 bases:

>100_bases
CAAACCTTTATTTTCTTGTCTACGCTATTCTATACCAGAACAGTAAATAACCGTATATTGTAGTGAAATTGTCTAGATCG
TTGACAAAGCGACCTTTTCA

Product: exodeoxyribonuclease VII, small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 75; Mature: 74

Protein sequence:

>75_residues
MSIHISSKFEEAMKELENIVAELESGNVPLERSVELFNKGKELHKYCDKVIKEISLHIESVDPDDKELSAKFSDD

Sequences:

>Translated_75_residues
MSIHISSKFEEAMKELENIVAELESGNVPLERSVELFNKGKELHKYCDKVIKEISLHIESVDPDDKELSAKFSDD
>Mature_74_residues
SIHISSKFEEAMKELENIVAELESGNVPLERSVELFNKGKELHKYCDKVIKEISLHIESVDPDDKELSAKFSDD

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_ANAPZ (Q2GLP1)

Other databases:

- EMBL:   CP000235
- RefSeq:   YP_504710.1
- ProteinModelPortal:   Q2GLP1
- SMR:   Q2GLP1
- STRING:   Q2GLP1
- GeneID:   3930693
- GenomeReviews:   CP000235_GR
- KEGG:   aph:APH_0079
- NMPDR:   fig|212042.5.peg.75
- TIGR:   APH_0079
- eggNOG:   NOG116413
- HOGENOM:   HBG728416
- OMA:   SINDEYN
- ProtClustDB:   CLSK2766792
- BioCyc:   APHA212042:APH_0079-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8564; Mature: 8433

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIHISSKFEEAMKELENIVAELESGNVPLERSVELFNKGKELHKYCDKVIKEISLHIES
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
VDPDDKELSAKFSDD
CCCCCHHCCCCCCCC
>Mature Secondary Structure 
SIHISSKFEEAMKELENIVAELESGNVPLERSVELFNKGKELHKYCDKVIKEISLHIES
CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
VDPDDKELSAKFSDD
CCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA