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The map label for this gene is yhcM [H]

Identifier: 88607807

GI number: 88607807

Start: 262595

End: 263590

Strand: Direct

Name: yhcM [H]

Synonym: APH_0262

Alternate gene names: 88607807

Gene position: 262595-263590 (Clockwise)

Preceding gene: 88606843

Following gene: 88607280

Centisome position: 17.85

GC content: 40.16

Gene sequence:

>996_bases
ATGGCTCTTCTAAGAGAGTTAGTGAAGTATACAAATGGCTCGCATAAATGGTGGAAATTTTGGCAAAAGCGTGCTGCACT
CCCTAAAAAAAAGGGAGTGTACCTGTACGGTGATGTAGGAAGAGGCAAATCGCTGTTGGCAAGCGTGTTTTATGATCACT
GTGGTATAGAACGGAAAAAAAAGCTACATTTCAACACGCTGATGAAGCAGTTGCACGACCTGCTACATAAGGCAAGACTA
GATAGTTTGCAAAACACGGATCATCTCGTCTCTTCCATGGATGAGTTGATAGGCGATGTATCGCTACTATATCTGGACGA
AATGCAAGTGCGAGATATATGCGAAGCAGTGATGCTTCATCGAGTTTTCAAAGTTTTATTTTCTCGCAAGTTGATTATAC
TGATGACCTCCAATTATCATCCACGAAAGTTATATGAAGACGGAGTGCAAAAAGAGCTTTTTATCCCTGCTATAGACCTA
ATAGAAGAGAATATGGAGGTTATTGTATTATCAGGGGAAAAAGACTATCGCGTTGAGAAGTGTTCAGCGAGTCGATGTAA
GTTTTATGTTGGCGCTGGAGCGGACCAGCAATTGCGAGATCATTTTCTCAATTTTATTAACTGCCAAAAAACTGAAAAAG
CGGTTTTTGTTTTGGGGAACAACAGAAGTATATACCTTGGAGAAGCTAGTAAAGACGTGATATGGTTCAGTTTTGACGAG
CTGTGTGGAAGCAAAAATCCTTTGTGGGCTTCTGATTATAAGAAAATAGCGCAGAGCTATTCTTACATTTTTATAGAAGG
CATTCCTGTATTTGATTACTATTCGCAAAATGAAATGCACAGATTTATTGTGCTAGTAGATGAGCTGTATGAGCATAAAA
GTCGCTTATTTTGTGCTTTAGCATGTCAGGTCAGTGAGCTATATGCTGGTGTGCCAGCTGTCGATATAAAACGCGCGATG
TCAAGATTATCAGAAATGGGGTCTGCAGCATGGTAA

Upstream 100 bases:

>100_bases
AAGTTAGCTCGTCTAGATGAACGGTTCTAAATCAAATGACATATACGCAATATACGAGGATATGGTTGCTAGGAAGGAGA
TAGTATTTGATAGTTGCCAA

Downstream 100 bases:

>100_bases
CTCATAAATCCAGTTAAAAGACATAAGCCCCATCAAAAATAGAGCCTTACTGTTTAGCTAATACGAGATTGCACAAACAC
TCTATAAATTTTGGATCTGT

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MALLRELVKYTNGSHKWWKFWQKRAALPKKKGVYLYGDVGRGKSLLASVFYDHCGIERKKKLHFNTLMKQLHDLLHKARL
DSLQNTDHLVSSMDELIGDVSLLYLDEMQVRDICEAVMLHRVFKVLFSRKLIILMTSNYHPRKLYEDGVQKELFIPAIDL
IEENMEVIVLSGEKDYRVEKCSASRCKFYVGAGADQQLRDHFLNFINCQKTEKAVFVLGNNRSIYLGEASKDVIWFSFDE
LCGSKNPLWASDYKKIAQSYSYIFIEGIPVFDYYSQNEMHRFIVLVDELYEHKSRLFCALACQVSELYAGVPAVDIKRAM
SRLSEMGSAAW

Sequences:

>Translated_331_residues
MALLRELVKYTNGSHKWWKFWQKRAALPKKKGVYLYGDVGRGKSLLASVFYDHCGIERKKKLHFNTLMKQLHDLLHKARL
DSLQNTDHLVSSMDELIGDVSLLYLDEMQVRDICEAVMLHRVFKVLFSRKLIILMTSNYHPRKLYEDGVQKELFIPAIDL
IEENMEVIVLSGEKDYRVEKCSASRCKFYVGAGADQQLRDHFLNFINCQKTEKAVFVLGNNRSIYLGEASKDVIWFSFDE
LCGSKNPLWASDYKKIAQSYSYIFIEGIPVFDYYSQNEMHRFIVLVDELYEHKSRLFCALACQVSELYAGVPAVDIKRAM
SRLSEMGSAAW
>Mature_330_residues
ALLRELVKYTNGSHKWWKFWQKRAALPKKKGVYLYGDVGRGKSLLASVFYDHCGIERKKKLHFNTLMKQLHDLLHKARLD
SLQNTDHLVSSMDELIGDVSLLYLDEMQVRDICEAVMLHRVFKVLFSRKLIILMTSNYHPRKLYEDGVQKELFIPAIDLI
EENMEVIVLSGEKDYRVEKCSASRCKFYVGAGADQQLRDHFLNFINCQKTEKAVFVLGNNRSIYLGEASKDVIWFSFDEL
CGSKNPLWASDYKKIAQSYSYIFIEGIPVFDYYSQNEMHRFIVLVDELYEHKSRLFCALACQVSELYAGVPAVDIKRAMS
RLSEMGSAAW

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=292, Percent_Identity=31.1643835616438, Blast_Score=157, Evalue=2e-38,
Organism=Escherichia coli, GI1789627, Length=317, Percent_Identity=29.6529968454259, Blast_Score=141, Evalue=6e-35,
Organism=Caenorhabditis elegans, GI17505769, Length=306, Percent_Identity=30.0653594771242, Blast_Score=158, Evalue=3e-39,
Organism=Saccharomyces cerevisiae, GI6320783, Length=315, Percent_Identity=28.2539682539683, Blast_Score=126, Evalue=5e-30,
Organism=Drosophila melanogaster, GI20129913, Length=295, Percent_Identity=30.5084745762712, Blast_Score=131, Evalue=8e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 38389; Mature: 38258

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLRELVKYTNGSHKWWKFWQKRAALPKKKGVYLYGDVGRGKSLLASVFYDHCGIERKK
CHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHH
KLHFNTLMKQLHDLLHKARLDSLQNTDHLVSSMDELIGDVSLLYLDEMQVRDICEAVMLH
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
RVFKVLFSRKLIILMTSNYHPRKLYEDGVQKELFIPAIDLIEENMEVIVLSGEKDYRVEK
HHHHHHHCCCEEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
CSASRCKFYVGAGADQQLRDHFLNFINCQKTEKAVFVLGNNRSIYLGEASKDVIWFSFDE
CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCCCEEEEEHHH
LCGSKNPLWASDYKKIAQSYSYIFIEGIPVFDYYSQNEMHRFIVLVDELYEHKSRLFCAL
HCCCCCCCCHHHHHHHHHCCCEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ACQVSELYAGVPAVDIKRAMSRLSEMGSAAW
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ALLRELVKYTNGSHKWWKFWQKRAALPKKKGVYLYGDVGRGKSLLASVFYDHCGIERKK
HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHH
KLHFNTLMKQLHDLLHKARLDSLQNTDHLVSSMDELIGDVSLLYLDEMQVRDICEAVMLH
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
RVFKVLFSRKLIILMTSNYHPRKLYEDGVQKELFIPAIDLIEENMEVIVLSGEKDYRVEK
HHHHHHHCCCEEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
CSASRCKFYVGAGADQQLRDHFLNFINCQKTEKAVFVLGNNRSIYLGEASKDVIWFSFDE
CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCCCEEEEEHHH
LCGSKNPLWASDYKKIAQSYSYIFIEGIPVFDYYSQNEMHRFIVLVDELYEHKSRLFCAL
HCCCCCCCCHHHHHHHHHCCCEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ACQVSELYAGVPAVDIKRAMSRLSEMGSAAW
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]