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The map label for this gene is ssb [H]

Identifier: 88607732

GI number: 88607732

Start: 493546

End: 494025

Strand: Reverse

Name: ssb [H]

Synonym: APH_0465

Alternate gene names: 88607732

Gene position: 494025-493546 (Counterclockwise)

Preceding gene: 88606889

Following gene: 88607060

Centisome position: 33.58

GC content: 47.08

Gene sequence:

>480_bases
ATGTCCTCGATAGGAGTCAATAAGGTTATTTTGATTGGGTATCTTGGAAAAGACCCAGATGTGAGAGTTATGCAAAATGG
GAAGGAAATGGCAAATTTCTCCCTTGCTACGTCCGAGAGCTGGCTGGACAAAGCGTCTGGTTCGCGCACTGAAAAAACAG
AGTGGCATAACATTGTAGTGTTCAGTGAAGGCCTCGTGAAGGTAGTTAAGACATGCGCACGCAAGGGTAGTAAAGTCTAC
CTAGAAGGTTCTCTACGCACAAGAAAATGGGTGGATCAGAATAACAATGACCGTTACACAACCGAAGTTGTCCTCCAGGG
TTTTAATTCGACTCTATGTCTTCTTGACCCCAAGGGAATGTCCTCCGGTGATGCTGCTGCTTCAAGCATAGGCGCTCCTC
CAGCAAGCAGCGAAGAGGCTGGTTCGTTTGGCGGCGGCGTGGATTTTCTTGATCCTGATGTAGATGAAATTCCCTTCTAA

Upstream 100 bases:

>100_bases
CAATTATATAAAAATATTCATGAAATTCCGATAACAAAGACTTGAATAAAACGAATTAGAGGATTAGTATTACCGGTGTT
TTTCTATTACGTTTGCGGTT

Downstream 100 bases:

>100_bases
CAGGGCATTTGCTAGCAAGTGTTGCAGTGTGTAAGATGCGCACCTGGGTGTCTGGTTTTTCTACCATCTTAATTGTGTAG
GTTTGACGCTCTTTGTGGTT

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSSIGVNKVILIGYLGKDPDVRVMQNGKEMANFSLATSESWLDKASGSRTEKTEWHNIVVFSEGLVKVVKTCARKGSKVY
LEGSLRTRKWVDQNNNDRYTTEVVLQGFNSTLCLLDPKGMSSGDAAASSIGAPPASSEEAGSFGGGVDFLDPDVDEIPF

Sequences:

>Translated_159_residues
MSSIGVNKVILIGYLGKDPDVRVMQNGKEMANFSLATSESWLDKASGSRTEKTEWHNIVVFSEGLVKVVKTCARKGSKVY
LEGSLRTRKWVDQNNNDRYTTEVVLQGFNSTLCLLDPKGMSSGDAAASSIGAPPASSEEAGSFGGGVDFLDPDVDEIPF
>Mature_158_residues
SSIGVNKVILIGYLGKDPDVRVMQNGKEMANFSLATSESWLDKASGSRTEKTEWHNIVVFSEGLVKVVKTCARKGSKVYL
EGSLRTRKWVDQNNNDRYTTEVVLQGFNSTLCLLDPKGMSSGDAAASSIGAPPASSEEAGSFGGGVDFLDPDVDEIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=104, Percent_Identity=37.5, Blast_Score=73, Evalue=1e-13,
Organism=Escherichia coli, GI1790494, Length=105, Percent_Identity=61.9047619047619, Blast_Score=138, Evalue=2e-34,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 17125; Mature: 16994

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50935 SSB ; PS00296 CHAPERONINS_CPN60

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSIGVNKVILIGYLGKDPDVRVMQNGKEMANFSLATSESWLDKASGSRTEKTEWHNIVV
CCCCCCCEEEEEEECCCCCCCCEECCCHHHHCEEEECCHHHHHHCCCCCCCCCCCEEEEE
FSEGLVKVVKTCARKGSKVYLEGSLRTRKWVDQNNNDRYTTEVVLQGFNSTLCLLDPKGM
ECCCHHHHHHHHHCCCCEEEEECCCCCHHHCCCCCCCCEEHHHHEECCCCEEEEECCCCC
SSGDAAASSIGAPPASSEEAGSFGGGVDFLDPDVDEIPF
CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
SSIGVNKVILIGYLGKDPDVRVMQNGKEMANFSLATSESWLDKASGSRTEKTEWHNIVV
CCCCCCEEEEEEECCCCCCCCEECCCHHHHCEEEECCHHHHHHCCCCCCCCCCCEEEEE
FSEGLVKVVKTCARKGSKVYLEGSLRTRKWVDQNNNDRYTTEVVLQGFNSTLCLLDPKGM
ECCCHHHHHHHHHCCCCEEEEECCCCCHHHCCCCCCCCEEHHHHEECCCCEEEEECCCCC
SSGDAAASSIGAPPASSEEAGSFGGGVDFLDPDVDEIPF
CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]