| Definition | Anaplasma phagocytophilum HZ, complete genome. |
|---|---|
| Accession | NC_007797 |
| Length | 1,471,282 |
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The map label for this gene is gyrB [H]
Identifier: 88607620
GI number: 88607620
Start: 747172
End: 749553
Strand: Reverse
Name: gyrB [H]
Synonym: APH_0716
Alternate gene names: 88607620
Gene position: 749553-747172 (Counterclockwise)
Preceding gene: 88607068
Following gene: 88607758
Centisome position: 50.95
GC content: 40.97
Gene sequence:
>2382_bases ATGAGTAGTTACAACGCCAGCTCTATAACTGTTTTGAGAGGTCTTGATGCGGTTAAGAAGCGTCCAGGTATGTACATAGG TGATACCGATGACGGTTCGGGATTACATCATATGGCATATGAGGTAATAGATAATGCAATTGATGAGGCGTTGGCGGGTT TTTGTAACAAAATCGACATCGTAATAGCCGCAGATGGATCAATTTCTGTAACTGATAATGGTAGAGGTATTCCTATAGAT ATTCATGAAGAGGAAGGAATATCTGCAGCGGAAGTTATTATGACTCAGCTCCATGCTGGAGGTAAGTTTGATCACAACAG CTATAAGGTTTCAGGTGGTCTACATGGAGTAGGGGTATCGGTTGTTAATGCGCTTTCTAGTTGGCTAGAATTGGTGATCT ACAAAGAGGGTAGAGAATATTTTATGAGGTTTGAAGAGGGGAAGGCTGTTGCTCCTCTGAAGATGGTAGGAGAGTGTGGG AACAAAAAAGGGACCTGCGTTCGTTTCATGCCGTCTTCCGACGTTTTTTCTTTTACTGATTTTAGTTATTCTACTCTTGA GAACCGGATTAGAGAGCTTTCTTTTTTAAATTCCAATGTAAGTATTAGTCTTAAGGATTTGCGTGAAAGTCCTGTTTTAG AATCAAATTTTGGCAATGTTTCTGATGCAGCTACTAAAGGCGTTTCCTTGTTTGTGGAGTATCTGGATCGTAATAAAACT CCTGTGACGCCCGTTATAACGCTCAGTGGCATTATGAGCGGCTATGAGATCTCTGTAGAGGTTTCAATGTGCTGGAATGA CTCTTACTATGAGAACATGCTGTGTTTTACAAATAATATCCGTCAAAGAGAAGGTGGTACACATCTAGCTGGTTTTCGTT CTGCTCTTACTCGGTGTGTGAACAACTATGCTACTAATGAGGGATATCTCAAGAAGGCAAAGGTATCGATTATAGGTGAG GATGTTCGCGAGGGATTAACTTGTGTATTATCTATAAAAATGCCAGATCCTAGGTTTTCATCACAGACTAAAGATAAGTT AGTGAGTTCGGAAGCTAGGCTTGTTGTTGAAAGTATAATGTTTGAAAAGCTTTCTTCTATTTTTGAAACTAACCCTAAGC TTGCGATGAGTGTTGTGGAGAGGGTTATACGCTCTGCAAAGGGACGGGAAGCTGCGCGAAAGGCTAGGGAGGTTATAAAG AGCCGAGGTACTCTGGATTTTACTTCTATACCAGGGAAGTTAGCTGATTGTCAGGAGAAGTCTCCAGAGCTTTCTGAGCT ATTTATAGTAGAGGGTAATTCAGCGGGTGGTTCTGCTAAGCAAGGTAGAGATCGGCGCTGTCAGGCTGTATTATCCTTAA GGGGTAAAATTTTGAATGTTGAAAGAGTGGGCCTAGATAGGACGTTGTCATCTAGTGAAATAACGTCTCTCATCATGGCT ATAGGTAGTAATATTGGGATTGGGAGCTTTGATATATCTAAAGTTCGGTATCATAAAATAATTATTATGACGGACGCGGA TGTCGATGGTTCGCATATTAGGACGCTTCTCTTAACGTTTTTCTTTAGGTATATGAGGGAGCTTATTGATGCGGGGTATT TGTATATAGCTCAACCGCCTTTATATAAGCTAACTAAGCATAAGAAGGATACGTATATCAAGAATGACGAGGCTTTAAGT GATTATATAGTGGGGAATGCCACTAAAAACCTAGTTCTTAGCGGAGCGGGAGAATGTTCAGGAGATGAGCTTAAAGCTGT TCTGCGTAAGTGTGTACGTATAGCTAATATAACAAAGACTTATTCTAGGATAGTGCCGCAGGAGGTTTTAGAAGCGCTGA TTGTTCGATATAAAAGGCATGGAATGGGGAGTTCGTCTGAGATCATGGCTTATATGAACAGCATGTTTCCTGAATACGAG TGGAATGTTGAAGTGCTGGAAGACGGTAGGCTGCAGATTCTAAAATTGTCACAAGGCATGGTTGATAGATACTATCTGGA TGCGGATTTTATGAATACAAGAGATGTGCAGACTATATTATCGGTGCTTGATGGTATAGAGAACGTATTTACGGAAGATA CGGTATTGACTGCTAAGGATTGCACGATCAGGGTGCATTCTCCTTGTGTTTTGGCTAGTAGTGTTGTGGAATTTGGTCGT AAGGACATGGCTCTTCAGAGGTTTAAAGGTCTTGGAGAGATGAATGCAGATCAGTTATGGGATACTACCTTGAACCCTCA GACTAGGACTTTGTTGAAGGTGAAAATTGCTGATGCAGAAGCGGCAGATGCCATTTTTTCTGTTCTAATGGGGGATTTTG TAGAGCCTAGACGTGATTTCATTAACAACAATGCTTTGAAGGTTCAGAATATAGACTCTTAA
Upstream 100 bases:
>100_bases TCATTTTTTGTACTGTGCTTTATTTTAAGTGGATTGAGGTTTTACATTTGTCGGATTTTTTGTATTATGGTGCATGGGTT TTTCTTGGTGATATTTAAGC
Downstream 100 bases:
>100_bases GCAGAAATTGATGTTCTGAGCATATGAGCTTGGTTGTAATTTAGGGTAGGGAGGCGGTAGACGGTGATTCGTGCTTCATG GTATGTTGTGAAGGCCAGCT
Product: DNA gyrase, B subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 793; Mature: 792
Protein sequence:
>793_residues MSSYNASSITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVIAADGSISVTDNGRGIPID IHEEEGISAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSVVNALSSWLELVIYKEGREYFMRFEEGKAVAPLKMVGECG NKKGTCVRFMPSSDVFSFTDFSYSTLENRIRELSFLNSNVSISLKDLRESPVLESNFGNVSDAATKGVSLFVEYLDRNKT PVTPVITLSGIMSGYEISVEVSMCWNDSYYENMLCFTNNIRQREGGTHLAGFRSALTRCVNNYATNEGYLKKAKVSIIGE DVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIMFEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIK SRGTLDFTSIPGKLADCQEKSPELSELFIVEGNSAGGSAKQGRDRRCQAVLSLRGKILNVERVGLDRTLSSSEITSLIMA IGSNIGIGSFDISKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYLYIAQPPLYKLTKHKKDTYIKNDEALS DYIVGNATKNLVLSGAGECSGDELKAVLRKCVRIANITKTYSRIVPQEVLEALIVRYKRHGMGSSSEIMAYMNSMFPEYE WNVEVLEDGRLQILKLSQGMVDRYYLDADFMNTRDVQTILSVLDGIENVFTEDTVLTAKDCTIRVHSPCVLASSVVEFGR KDMALQRFKGLGEMNADQLWDTTLNPQTRTLLKVKIADAEAADAIFSVLMGDFVEPRRDFINNNALKVQNIDS
Sequences:
>Translated_793_residues MSSYNASSITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVIAADGSISVTDNGRGIPID IHEEEGISAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSVVNALSSWLELVIYKEGREYFMRFEEGKAVAPLKMVGECG NKKGTCVRFMPSSDVFSFTDFSYSTLENRIRELSFLNSNVSISLKDLRESPVLESNFGNVSDAATKGVSLFVEYLDRNKT PVTPVITLSGIMSGYEISVEVSMCWNDSYYENMLCFTNNIRQREGGTHLAGFRSALTRCVNNYATNEGYLKKAKVSIIGE DVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIMFEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIK SRGTLDFTSIPGKLADCQEKSPELSELFIVEGNSAGGSAKQGRDRRCQAVLSLRGKILNVERVGLDRTLSSSEITSLIMA IGSNIGIGSFDISKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYLYIAQPPLYKLTKHKKDTYIKNDEALS DYIVGNATKNLVLSGAGECSGDELKAVLRKCVRIANITKTYSRIVPQEVLEALIVRYKRHGMGSSSEIMAYMNSMFPEYE WNVEVLEDGRLQILKLSQGMVDRYYLDADFMNTRDVQTILSVLDGIENVFTEDTVLTAKDCTIRVHSPCVLASSVVEFGR KDMALQRFKGLGEMNADQLWDTTLNPQTRTLLKVKIADAEAADAIFSVLMGDFVEPRRDFINNNALKVQNIDS >Mature_792_residues SSYNASSITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVIAADGSISVTDNGRGIPIDI HEEEGISAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSVVNALSSWLELVIYKEGREYFMRFEEGKAVAPLKMVGECGN KKGTCVRFMPSSDVFSFTDFSYSTLENRIRELSFLNSNVSISLKDLRESPVLESNFGNVSDAATKGVSLFVEYLDRNKTP VTPVITLSGIMSGYEISVEVSMCWNDSYYENMLCFTNNIRQREGGTHLAGFRSALTRCVNNYATNEGYLKKAKVSIIGED VREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIMFEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKS RGTLDFTSIPGKLADCQEKSPELSELFIVEGNSAGGSAKQGRDRRCQAVLSLRGKILNVERVGLDRTLSSSEITSLIMAI GSNIGIGSFDISKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYLYIAQPPLYKLTKHKKDTYIKNDEALSD YIVGNATKNLVLSGAGECSGDELKAVLRKCVRIANITKTYSRIVPQEVLEALIVRYKRHGMGSSSEIMAYMNSMFPEYEW NVEVLEDGRLQILKLSQGMVDRYYLDADFMNTRDVQTILSVLDGIENVFTEDTVLTAKDCTIRVHSPCVLASSVVEFGRK DMALQRFKGLGEMNADQLWDTTLNPQTRTLLKVKIADAEAADAIFSVLMGDFVEPRRDFINNNALKVQNIDS
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0187
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Homo sapiens, GI19913406, Length=562, Percent_Identity=24.0213523131673, Blast_Score=111, Evalue=3e-24, Organism=Homo sapiens, GI19913408, Length=558, Percent_Identity=24.5519713261649, Blast_Score=108, Evalue=2e-23, Organism=Escherichia coli, GI48994957, Length=811, Percent_Identity=50.4315659679408, Blast_Score=764, Evalue=0.0, Organism=Escherichia coli, GI1789408, Length=560, Percent_Identity=39.1071428571429, Blast_Score=380, Evalue=1e-106, Organism=Caenorhabditis elegans, GI17535065, Length=552, Percent_Identity=23.5507246376812, Blast_Score=95, Evalue=1e-19, Organism=Caenorhabditis elegans, GI212645845, Length=297, Percent_Identity=24.2424242424242, Blast_Score=80, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6324241, Length=591, Percent_Identity=26.2267343485618, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI17136538, Length=548, Percent_Identity=26.6423357664234, Blast_Score=116, Evalue=7e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011557 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR001241 - InterPro: IPR013759 - InterPro: IPR002288 - InterPro: IPR013506 - InterPro: IPR013760 - InterPro: IPR018522 - InterPro: IPR006171 [H]
Pfam domain/function: PF00204 DNA_gyraseB; PF00986 DNA_gyraseB_C; PF02518 HATPase_c; PF01751 Toprim [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 87890; Mature: 87758
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: PS00177 TOPOISOMERASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSYNASSITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDI CCCCCCCCCHHHHCCHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE VIAADGSISVTDNGRGIPIDIHEEEGISAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVS EEECCCEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHH VVNALSSWLELVIYKEGREYFMRFEEGKAVAPLKMVGECGNKKGTCVRFMPSSDVFSFTD HHHHHHHHHHHHHHHCCHHHHHEECCCCCCCHHHHHHHCCCCCCCEEEECCCCCCEEECC FSYSTLENRIRELSFLNSNVSISLKDLRESPVLESNFGNVSDAATKGVSLFVEYLDRNKT CCHHHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC PVTPVITLSGIMSGYEISVEVSMCWNDSYYENMLCFTNNIRQREGGTHLAGFRSALTRCV CCCCEEEHHHHCCCEEEEEEEEEEECCCHHHCCHHHHCCHHHCCCCCHHHHHHHHHHHHH NNYATNEGYLKKAKVSIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIM HHHCCCCCHHHHHHHHEEHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH FEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKSRGTLDFTSIPGKLADCQEK HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCC SPELSELFIVEGNSAGGSAKQGRDRRCQAVLSLRGKILNVERVGLDRTLSSSEITSLIMA CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHH IGSNIGIGSFDISKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYLYIAQPP HCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC LYKLTKHKKDTYIKNDEALSDYIVGNATKNLVLSGAGECSGDELKAVLRKCVRIANITKT HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH YSRIVPQEVLEALIVRYKRHGMGSSSEIMAYMNSMFPEYEWNVEVLEDGRLQILKLSQGM HHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCC VDRYYLDADFMNTRDVQTILSVLDGIENVFTEDTVLTAKDCTIRVHSPCVLASSVVEFGR HHHEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCHHHHHHHHHHCH KDMALQRFKGLGEMNADQLWDTTLNPQTRTLLKVKIADAEAADAIFSVLMGDFVEPRRDF HHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH INNNALKVQNIDS HCCCCEEEEECCC >Mature Secondary Structure SSYNASSITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDI CCCCCCCCHHHHCCHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE VIAADGSISVTDNGRGIPIDIHEEEGISAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVS EEECCCEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHH VVNALSSWLELVIYKEGREYFMRFEEGKAVAPLKMVGECGNKKGTCVRFMPSSDVFSFTD HHHHHHHHHHHHHHHCCHHHHHEECCCCCCCHHHHHHHCCCCCCCEEEECCCCCCEEECC FSYSTLENRIRELSFLNSNVSISLKDLRESPVLESNFGNVSDAATKGVSLFVEYLDRNKT CCHHHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC PVTPVITLSGIMSGYEISVEVSMCWNDSYYENMLCFTNNIRQREGGTHLAGFRSALTRCV CCCCEEEHHHHCCCEEEEEEEEEEECCCHHHCCHHHHCCHHHCCCCCHHHHHHHHHHHHH NNYATNEGYLKKAKVSIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIM HHHCCCCCHHHHHHHHEEHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH FEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKSRGTLDFTSIPGKLADCQEK HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCC SPELSELFIVEGNSAGGSAKQGRDRRCQAVLSLRGKILNVERVGLDRTLSSSEITSLIMA CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHH IGSNIGIGSFDISKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYLYIAQPP HCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC LYKLTKHKKDTYIKNDEALSDYIVGNATKNLVLSGAGECSGDELKAVLRKCVRIANITKT HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH YSRIVPQEVLEALIVRYKRHGMGSSSEIMAYMNSMFPEYEWNVEVLEDGRLQILKLSQGM HHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCC VDRYYLDADFMNTRDVQTILSVLDGIENVFTEDTVLTAKDCTIRVHSPCVLASSVVEFGR HHHEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCHHHHHHHHHHCH KDMALQRFKGLGEMNADQLWDTTLNPQTRTLLKVKIADAEAADAIFSVLMGDFVEPRRDF HHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH INNNALKVQNIDS HCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA