Click here to switch to the map view.

The map label for this gene is msp4 [H]

Identifier: 88607157

GI number: 88607157

Start: 146561

End: 147346

Strand: Reverse

Name: msp4 [H]

Synonym: APH_0142

Alternate gene names: 88607157

Gene position: 147346-146561 (Counterclockwise)

Preceding gene: 88607140

Following gene: 88607544

Centisome position: 10.01

GC content: 43.38

Gene sequence:

>786_bases
GTGGAGATTTCTCATTCCGAGATTGATGGCAAGGTTTGTAAGACGAAGTCGGCGGGAACTGGAAAAAATCCGTGTGATCA
TAGCCAAAAGCCGTGTAGTACGAATGCGTATTATGCGAGGAGAACGCAGAAGAGTAGGAGTTCGGGAAAAACGTCTTTAT
GCGGGGACAGTGGGTATAGCGGGCAGGAGCTAATAACGGGTGGGCATTATAGCAGTCCAAGCGTATTCCGGAATTTTGTC
AAAGACACACTACAAGGAAATGGTAGTGAGAACTGGCCTACATCTACTGGAGAAGGAAGTGAGAGTAACGACAACGCCAT
AGCCGTTGCTAAGGACCTAGTAAATGAACTTACTCCTGAAGAACGAACCATAGTGGCTGGGTTACTTGCTAAAATTATTG
AAGGAAGCGAGGTTATTGAGATTAGGGCCATCTCTTCGACTTCAGTTACAATGAATATTTGCTCAGATATCACGATAAGT
AATATCTTAATGCCGTATGTTTGTGTTGGTCCAGGGATGAGCTTTGTTAGTGTTGTTGATGGTCACACTGCTGCAAAGTT
TGCATATCGGTTAAAGGCAGGTCTGAGTTATAAATTTTCGAAAGAAGTTACAGCTTTTGCAGGTGGTTTTTACCATCACG
TTATAGGAGATGGTGTTTATGATGATCTGCCATTGCGGCATTTATCTGATGATATTAGTCCTGTGAAACATGCTAAGGAA
ACCGCCATTGCTAGATTCGTCATGAGGTACTTTGGCGGGGAATTTGGTGTTAGGCTCGCTTTTTAA

Upstream 100 bases:

>100_bases
TAAGGAGTTAGCTTATGATGTTGTTACTGGACAGACTGATAACCTTGCCGCTGCTCTTGCCAAAACCTCCGGTAAGGATA
TTGTTCAGTTTGCTAAGGCG

Downstream 100 bases:

>100_bases
GGTTGCGACCTAAAAGCACTTAGCTCGCCTTCACTCCCCCTTAAGCAATATGATGCACATTTGTTGCCCTACAAATCTAA
TATAAGGTTTGTTGCCTATA

Product: P44-87 outer membrane protein, truncation

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MEISHSEIDGKVCKTKSAGTGKNPCDHSQKPCSTNAYYARRTQKSRSSGKTSLCGDSGYSGQELITGGHYSSPSVFRNFV
KDTLQGNGSENWPTSTGEGSESNDNAIAVAKDLVNELTPEERTIVAGLLAKIIEGSEVIEIRAISSTSVTMNICSDITIS
NILMPYVCVGPGMSFVSVVDGHTAAKFAYRLKAGLSYKFSKEVTAFAGGFYHHVIGDGVYDDLPLRHLSDDISPVKHAKE
TAIARFVMRYFGGEFGVRLAF

Sequences:

>Translated_261_residues
MEISHSEIDGKVCKTKSAGTGKNPCDHSQKPCSTNAYYARRTQKSRSSGKTSLCGDSGYSGQELITGGHYSSPSVFRNFV
KDTLQGNGSENWPTSTGEGSESNDNAIAVAKDLVNELTPEERTIVAGLLAKIIEGSEVIEIRAISSTSVTMNICSDITIS
NILMPYVCVGPGMSFVSVVDGHTAAKFAYRLKAGLSYKFSKEVTAFAGGFYHHVIGDGVYDDLPLRHLSDDISPVKHAKE
TAIARFVMRYFGGEFGVRLAF
>Mature_261_residues
MEISHSEIDGKVCKTKSAGTGKNPCDHSQKPCSTNAYYARRTQKSRSSGKTSLCGDSGYSGQELITGGHYSSPSVFRNFV
KDTLQGNGSENWPTSTGEGSESNDNAIAVAKDLVNELTPEERTIVAGLLAKIIEGSEVIEIRAISSTSVTMNICSDITIS
NILMPYVCVGPGMSFVSVVDGHTAAKFAYRLKAGLSYKFSKEVTAFAGGFYHHVIGDGVYDDLPLRHLSDDISPVKHAKE
TAIARFVMRYFGGEFGVRLAF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 28113; Mature: 28113

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEISHSEIDGKVCKTKSAGTGKNPCDHSQKPCSTNAYYARRTQKSRSSGKTSLCGDSGYS
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
GQELITGGHYSSPSVFRNFVKDTLQGNGSENWPTSTGEGSESNDNAIAVAKDLVNELTPE
CCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
ERTIVAGLLAKIIEGSEVIEIRAISSTSVTMNICSDITISNILMPYVCVGPGMSFVSVVD
HHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEHHCCHHHHHHHHHHHHHCCCCHHHHHHC
GHTAAKFAYRLKAGLSYKFSKEVTAFAGGFYHHVIGDGVYDDLPLRHLSDDISPVKHAKE
CCHHHHHHHHHHHCCCEEHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHH
TAIARFVMRYFGGEFGVRLAF
HHHHHHHHHHHCCCCCEEECC
>Mature Secondary Structure
MEISHSEIDGKVCKTKSAGTGKNPCDHSQKPCSTNAYYARRTQKSRSSGKTSLCGDSGYS
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
GQELITGGHYSSPSVFRNFVKDTLQGNGSENWPTSTGEGSESNDNAIAVAKDLVNELTPE
CCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
ERTIVAGLLAKIIEGSEVIEIRAISSTSVTMNICSDITISNILMPYVCVGPGMSFVSVVD
HHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEHHCCHHHHHHHHHHHHHCCCCHHHHHHC
GHTAAKFAYRLKAGLSYKFSKEVTAFAGGFYHHVIGDGVYDDLPLRHLSDDISPVKHAKE
CCHHHHHHHHHHHCCCEEHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHH
TAIARFVMRYFGGEFGVRLAF
HHHHHHHHHHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]